miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48349_bna-miR168:pmrd
Length = 133
Score = 264 bits (133), Expect = 1e-71
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1 ttacggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttacggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacg 60
Query: 61 tggctttccatggttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggctttccatggttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatcc 120
Query: 121 gagtccgacgtga 133
|||||||||||||
Sbjct: 121 gagtccgacgtga 133
>46958_ath-miR168b:pmrd
Length = 124
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63
|||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtgt 64
Query: 64 ctttccatggttggcttgtgagc 86
||| ||||||||| ||||||||
Sbjct: 65 cttgtcatggttggtttgtgagc 87
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 67.9 bits (34), Expect = 2e-12
Identities = 90/107 (84%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt-ggctgacaccgccacgtggcttt----ccatg 72
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||| || |
Sbjct: 13 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 72
Query: 73 gttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
|||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 73 attggtttgtgagcagggattggatcccgccttgcatcaactgaatc 119
>46957_ath-miR168a:pmrd
Length = 138
Score = 67.9 bits (34), Expect = 2e-12
Identities = 90/107 (84%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt-ggctgacaccgccacgtggcttt----ccatg 72
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||| || |
Sbjct: 18 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 77
Query: 73 gttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
|||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 78 attggtttgtgagcagggattggatcccgccttgcatcaactgaatc 124
>54388_rco-miR168:pmrd
Length = 156
Score = 65.9 bits (33), Expect = 7e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggct 48
|||||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
>46959_ath-miR168m:pmrd
Length = 104
Score = 61.9 bits (31), Expect = 1e-10
Identities = 84/100 (84%), Gaps = 5/100 (5%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt-ggctgacaccgccacgtggcttt----ccatg 72
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||| || |
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 60
Query: 73 gttggcttgtgagcagggatcggatcccgccttgtatcaa 112
|||| |||||||||||||| ||||||||||||| |||||
Sbjct: 61 attggtttgtgagcagggattggatcccgccttgcatcaa 100
>51650_ptc-miR168a:pmrd
Length = 160
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 11 ctctgactcgcttggtgcaggtcgggaactgatt 44
|||||| |||||||||||||||||||||||||||
Sbjct: 4 ctctgattcgcttggtgcaggtcgggaactgatt 37
>54375_pts-miR168b:pmrd
Length = 140
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt 44
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>54374_pts-miR168a:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt 44
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>54366_ptr-miR168:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt 44
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>51651_ptc-miR168b:pmrd
Length = 136
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt 44
|||||||||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcgggaactgatt 37
>48649_hte-miR168:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactg 41
||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactg 24
>55000_zma-miR168b:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 cggatcccgccttgtatcaagtgaatc 119
|||||||||||||| ||||||||||||
Sbjct: 62 cggatcccgccttgcatcaagtgaatc 88
>54802_vvi-miR168:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcgggaac 32
>48560_gma-miR168:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>54436_sbi-miR168:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 95 gatcccgccttgtatcaagtgaatccgag 123
|||||||||||| | ||||||||||||||
Sbjct: 66 gatcccgccttgcaccaagtgaatccgag 94
>54665_stu-miR168:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcggga 37
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcggga 37
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
