miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48350_bna-miR169a:pmrd
Length = 132
Score = 220 bits (111), Expect = 2e-58
Identities = 125/132 (94%)
Strand = Plus / Plus
Query: 1 tgtgaccaaagtagtgtgcagccaaggatgacttgccgatttaaaatatctgataagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgaccaaagtagtgtgcagccaaggatgacttgccgatttaaaatatctgataagtat 60
Query: 61 tttatttcgtattttaaagnnnnnnntcatgatcggcaagttgtccttggctatacgttt 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 tttatttcgtattttaaagaaaaaaatcatgatcggcaagttgtccttggctatacgttt 120
Query: 121 ctttgtgtcgcg 132
||||||||||||
Sbjct: 121 ctttgtgtcgcg 132
>48351_bna-miR169b:pmrd
Length = 188
Score = 87.7 bits (44), Expect = 2e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 2 gtgaccaaagtagtgtgcagccaaggatgacttgccgatttaaaatat 49
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 gtgaccaaagtagtgtgcagccaaggatgacttgccgatttgaaatat 48
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 89 atgatcggcaagttgtccttggctatacgtttctttgtgtcgc 131
|||||||||||||| |||||||||| | |||||||||||||||
Sbjct: 146 atgatcggcaagttttccttggctacatgtttctttgtgtcgc 188
>46960_ath-miR169a:pmrd
Length = 226
Score = 79.8 bits (40), Expect = 5e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 2 gtgaccaaagtagtgtgcagccaaggatgacttgccgatttaaa 45
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgacgaaagtagtgtgcagccaaggatgacttgccgatttaaa 44
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 88 catgatcggcaagttgtccttggctatacgtttctttgtgtcgc 131
|||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 183 catgatcggcaagttgtccttggctacacgttactttgtgtcgc 226
>55004_zma-miR169b:pmrd
Length = 156
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccgat 40
|||||||||||||||||||||||||
Sbjct: 18 gtgcagccaaggatgacttgccgat 42
>55003_zma-miR169a:pmrd
Length = 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccgat 40
|||||||||||||||||||||||||
Sbjct: 18 gtgcagccaaggatgacttgccgat 42
>48876_osa-miR169a:pmrd
Length = 173
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccgat 40
|||||||||||||||||||||||||
Sbjct: 35 gtgcagccaaggatgacttgccgat 59
>54809_vvi-miR169g:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccga 39
||||||||||||||||||||||||
Sbjct: 10 gtgcagccaaggatgacttgccga 33
>54808_vvi-miR169f:pmrd
Length = 184
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccga 39
||||||||||||||||||||||||
Sbjct: 10 gtgcagccaaggatgacttgccga 33
>54549_sly-miR169c:pmrd
Length = 147
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccga 39
||||||||||||||||||||||||
Sbjct: 38 gtgcagccaaggatgacttgccga 61
>51652_ptc-miR169a:pmrd
Length = 165
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccgatttaa 44
||||||||||||||||||||||| ||||
Sbjct: 9 tgcagccaaggatgacttgccgacttaa 36
>48562_gma-miR169b:pmrd
Length = 183
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccgat 40
||||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccgat 32
>54825_vvi-miR169w:pmrd
Length = 143
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccg 38
|||||||||||||||||||||||
Sbjct: 10 gtgcagccaaggatgacttgccg 32
>54813_vvi-miR169k:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccg 38
|||||||||||||||||||||||
Sbjct: 10 gtgcagccaaggatgacttgccg 32
>54812_vvi-miR169j:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccg 38
|||||||||||||||||||||||
Sbjct: 10 gtgcagccaaggatgacttgccg 32
>52003_ptc-miRf10181-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccga 39
|||||||||||||||||||||||
Sbjct: 8 tgcagccaaggatgacttgccga 30
>51663_ptc-miR169f:pmrd
Length = 239
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gtgcagccaaggatgacttgccg 38
|||||||||||||||||||||||
Sbjct: 8 gtgcagccaaggatgacttgccg 30
>51660_ptc-miR169c:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccga 39
|||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccga 31
>51659_ptc-miR169b:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccga 39
|||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccga 31
>48718_mtr-miR169b:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccga 39
|||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccga 41
>48717_mtr-miR169a:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccga 39
|||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccga 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 cggcaagttgtccttggctat 114
|||||||||||||||||||||
Sbjct: 83 cggcaagttgtccttggctat 103
>48309_bdi-miR169a:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccga 39
|||||||||||||||||||||||
Sbjct: 14 tgcagccaaggatgacttgccga 36
>46964_ath-miR169e:pmrd
Length = 217
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 agccaaggatgacttgccgattt 42
|||||||||||||||||||||||
Sbjct: 71 agccaaggatgacttgccgattt 93
>55023_zma-miR169u:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccgat 40
||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgat 22
>55022_zma-miR169t:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccgat 40
||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgat 22
>55005_zma-miR169c:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40
>54821_vvi-miR169s:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
>54805_vvi-miR169c:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 cggcaagttgtccttggcta 113
||||||||||||||||||||
Sbjct: 57 cggcaagttgtccttggcta 76
>54803_vvi-miR169a:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
>54547_sly-miR169a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 39 tgcagccaaggatgacttgccg 60
>54437_sbi-miR169a:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccgat 40
||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgat 22
>51664_ptc-miR169g:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccg 30
>51662_ptc-miR169e:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 atgatcggcaagttgtccttggctat 114
|||||||||||| |||||||||||||
Sbjct: 134 atgatcggcaagctgtccttggctat 159
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 gcagccaaggatgacttgccg 38
|||||||||||||||||||||
Sbjct: 10 gcagccaaggatgacttgccg 30
>51661_ptc-miR169d:pmrd
Length = 111
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccg 30
>51339_phy-miR169:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 13 tgcagccaaggatgacttgccg 34
>50631_osa-miRf11416-akr:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 125 tgcagccaaggatgacttgccg 104
>50630_osa-miRf11415-akr:pmrd
Length = 147
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 20 tgcagccaaggatgacttgccg 41
>49845_osa-miRf10630-akr:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 105 tgcagccaaggatgacttgccg 84
>48891_osa-miR169p:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 118 tgcagccaaggatgacttgccg 97
>48878_osa-miR169c:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccg 30
>48877_osa-miR169b:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccg 30
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 cggcaagttgtccttggcta 113
||||||||||||||||||||
Sbjct: 99 cggcaagttgtccttggcta 118
>48561_gma-miR169a:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40
>47961_ath-miRf10861-akr:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 3 tgcagccaaggatgacttgccg 24
>47674_ath-miRf10574-akr:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 114 tgcagccaaggatgacttgccg 93
>46965_ath-miR169f:pmrd
Length = 167
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 agccaaggatgacttgccgatttaaa 45
||||||||||||||||||| ||||||
Sbjct: 34 agccaaggatgacttgccggtttaaa 59
>46961_ath-miR169b:pmrd
Length = 181
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 41 tgcagccaaggatgacttgccg 62
>46875_aqc-miR169c:pmrd
Length = 111
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgcagccaaggatgacttgccg 38
||||||||||||||||||||||
Sbjct: 3 tgcagccaaggatgacttgccg 24
>55021_zma-miR169s:pmrd
Length = 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccga 39
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccga 21
>54367_ptr-miR169a:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccga 39
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccga 21
>48719_mtr-miR169c:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 19 cagccaaggatgacttgccga 39
|||||||||||||||||||||
Sbjct: 82 cagccaaggatgacttgccga 62
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 94 cggcaagttgtccttggcta 113
||||||||||||||||||||
Sbjct: 20 cggcaagttgtccttggcta 1
>46963_ath-miR169d:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 agccaaggatgacttgccgat 40
|||||||||||||||||||||
Sbjct: 43 agccaaggatgacttgccgat 63
>55020_zma-miR169r:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>54447_sbi-miR169k:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>54438_sbi-miR169b:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 cggcaagttgtccttggcta 113
||||||||||||||||||||
Sbjct: 83 cggcaagttgtccttggcta 102
>54091_ptc-miRf12269-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 111 cagccaaggatgacttgccg 92
>52526_ptc-miRf10704-akr:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 110 cagccaaggatgacttgccg 91
>51676_ptc-miR169s:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccg 31
>51665_ptc-miR169h:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 11 cagccaaggatgacttgccg 30
>48880_osa-miR169e:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tgtgcagccaaggatgacttgccg 38
|||| |||||||||||||||||||
Sbjct: 7 tgtgtagccaaggatgacttgccg 30
>48639_gso-miR169a:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>48564_gma-miR169p:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>48563_gma-miR169c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 agccaaggatgacttgccga 39
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccga 31
>46962_ath-miR169c:pmrd
Length = 411
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 cagccaaggatgacttgccg 38
||||||||||||||||||||
Sbjct: 113 cagccaaggatgacttgccg 132
>46859_ama-miR169:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 agccaaggatgacttgccga 39
||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccga 34
