miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48362_bna-miR169m:pmrd
Length = 163
Score = 323 bits (163), Expect = 2e-89
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1 tatatgtatcagagagtcatgcatgggaaaatagagaatgataatgagccaaagatgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatatgtatcagagagtcatgcatgggaaaatagagaatgataatgagccaaagatgact 60
Query: 61 tgccgattttaccaaagaatttaaaactgataatggtgactggcaagtcgactttggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgccgattttaccaaagaatttaaaactgataatggtgactggcaagtcgactttggctc 120
Query: 121 tgtttccttctcttcttttcgatgtaagactctagatatctat 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtttccttctcttcttttcgatgtaagactctagatatctat 163
>46964_ath-miR169e:pmrd
Length = 217
Score = 125 bits (63), Expect = 1e-29
Identities = 132/154 (85%), Gaps = 2/154 (1%)
Strand = Plus / Plus
Query: 5 tgtatcagagagtcatgcatgggaaaatagagaatgataatgagccaaagatgacttgcc 64
||||||| |||||| ||||||| |||||||| ||||| | |||||||| |||||||||||
Sbjct: 29 tgtatcatagagtcttgcatggaaaaatagaaaatgagattgagccaaggatgacttgcc 88
Query: 65 gattttaccaaagaatttaaaactgataatggtgactggcaagtcgactttggctctgtt 124
|||||| ||| |||| | | ||||| ||||| | ||||||| |||||||||||||||
Sbjct: 89 gattttctcaacgaatctta--ctgattatggtatccggcaagttgactttggctctgtt 146
Query: 125 tccttctcttcttttcgatgtaagactctagata 158
|||||| |||||||||||||| | ||||||||||
Sbjct: 147 tccttcccttcttttcgatgtcaaactctagata 180
>46967_ath-miR169g:pmrd
Length = 379
Score = 99.6 bits (50), Expect = 6e-22
Identities = 129/154 (83%), Gaps = 6/154 (3%)
Strand = Plus / Plus
Query: 5 tgtatcagagagtcatgcatgggaaaatagagaatgataatgagccaaagatgacttgcc 64
|||||||||| ||| ||||||| | |||||||||||| |||||||| |||||||||||
Sbjct: 104 tgtatcagagggtcttgcatggaagaatagagaatgaggttgagccaaggatgacttgcc 163
Query: 65 ga----ttttaccaaagaatttaa--aactgataatggtgactggcaagtcgactttggc 118
| ||||||||| |||| ||| ||||||| ||||| | ||||||| ||| |||||
Sbjct: 164 gggtttttttaccaatgaatctaattaactgattctggtgtccggcaagttgaccttggc 223
Query: 119 tctgtttccttctcttcttttcgatgtaagactc 152
||||||||||||||||||||| ||||| ||||||
Sbjct: 224 tctgtttccttctcttcttttggatgtcagactc 257
>46966_ath-miR169g:pmrd
Length = 379
Score = 99.6 bits (50), Expect = 6e-22
Identities = 129/154 (83%), Gaps = 6/154 (3%)
Strand = Plus / Plus
Query: 5 tgtatcagagagtcatgcatgggaaaatagagaatgataatgagccaaagatgacttgcc 64
|||||||||| ||| ||||||| | |||||||||||| |||||||| |||||||||||
Sbjct: 104 tgtatcagagggtcttgcatggaagaatagagaatgaggttgagccaaggatgacttgcc 163
Query: 65 ga----ttttaccaaagaatttaa--aactgataatggtgactggcaagtcgactttggc 118
| ||||||||| |||| ||| ||||||| ||||| | ||||||| ||| |||||
Sbjct: 164 gggtttttttaccaatgaatctaattaactgattctggtgtccggcaagttgaccttggc 223
Query: 119 tctgtttccttctcttcttttcgatgtaagactc 152
||||||||||||||||||||| ||||| ||||||
Sbjct: 224 tctgtttccttctcttcttttggatgtcagactc 257
>46963_ath-miR169d:pmrd
Length = 154
Score = 93.7 bits (47), Expect = 4e-20
Identities = 130/155 (83%), Gaps = 2/155 (1%)
Strand = Plus / Plus
Query: 6 gtatcagagagtcatgcatgggaaaat-agagaatgataatgagccaaagatgacttgcc 64
|||||| |||||| ||||||| ||||| | ||||||| | |||||||| |||||||||||
Sbjct: 1 gtatcatagagtcttgcatggaaaaattaaagaatgagattgagccaaggatgacttgcc 60
Query: 65 gattttaccaaagaatttaaaactgataatggtgactggcaagtcgactttggctctgtt 124
||| ||| ||| ||| | || ||||| ||||| | ||||||| ||| |||||||||||
Sbjct: 61 gatgttatcaacaaatcttaa-ctgattttggtgtccggcaagttgaccttggctctgtt 119
Query: 125 tccttctcttcttttcgatgtaagactctagatat 159
||||||| |||||||| |||| | |||||||||||
Sbjct: 120 tccttcttttcttttcaatgtcaaactctagatat 154
>48239_ath-miRf11139-akr:pmrd
Length = 119
Score = 69.9 bits (35), Expect = 6e-13
Identities = 96/115 (83%), Gaps = 6/115 (5%)
Strand = Plus / Plus
Query: 30 aatagagaatgataatgagccaaagatgacttgccga----ttttaccaaagaatttaa- 84
|||||||||||| |||||||| |||||||||||| ||||||||| |||| |||
Sbjct: 5 aatagagaatgaggttgagccaaggatgacttgccgggtttttttaccaatgaatctaat 64
Query: 85 -aactgataatggtgactggcaagtcgactttggctctgtttccttctcttcttt 138
||||||| ||||| | ||||||| ||| |||||||||||||||||||||||||
Sbjct: 65 taactgattctggtgtccggcaagttgaccttggctctgtttccttctcttcttt 119
>48562_gma-miR169b:pmrd
Length = 183
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 47 agccaaagatgacttgccgattttacc 73
|||||||||||||||||||| ||||||
Sbjct: 173 agccaaagatgacttgccgaatttacc 147
