miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48371_bna-miR390b:pmrd
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatcatgatcacacacatcgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatcatgatcacacacatcgata 60
Query: 61 tttttggcgctgtccatcctgagtttcattggctcttcttactac 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttttggcgctgtccatcctgagtttcattggctcttcttactac 105
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 131 bits (66), Expect = 1e-31
Identities = 99/108 (91%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatcatgatcacacac---atcg 57
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatct 60
Query: 58 atatttttggcgctgtccatcctgagtttcattggctcttcttactac 105
|| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 at-tttttggcgctatccatcctgagtttcattggctcttcttactac 107
>46995_ath-miR390a:pmrd
Length = 107
Score = 131 bits (66), Expect = 1e-31
Identities = 99/108 (91%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatcatgatcacacac---atcg 57
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatct 60
Query: 58 atatttttggcgctgtccatcctgagtttcattggctcttcttactac 105
|| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 at-tttttggcgctatccatcctgagtttcattggctcttcttactac 107
>48372_bna-miR390c:pmrd
Length = 128
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccat 40
||||||||| | ||||||||||||||||||||||||||||
Sbjct: 6 gtagagaagtagctgtaaagctcaggagggatagcgccat 45
>48499_ghr-miR390b:pmrd
Length = 132
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgtaaagctcaggagggatagcgccat 40
||||||||||| |||||||||||||||||||||||
Sbjct: 6 gaagaatctgttaagctcaggagggatagcgccat 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 gcgctgtccatcctgagtttcattggctcttctt 100
||||| ||||||||||||||||| || |||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttctt 127
>48498_ghr-miR390a:pmrd
Length = 124
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgtaaagctcaggagggatagcgccat 40
||||||||||| |||||||||||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgccat 37
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 gcgctgtccatcctgagtttcattggctcttctt 100
||||| ||||||||||||||||| || |||||||
Sbjct: 91 gcgctatccatcctgagtttcatcggttcttctt 124
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 63/72 (87%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccatcatgatcacacac---atcgatatttttggcgctgtc 74
||||||||||||||||||||||| ||||||||| | ||| || ||||||||||| ||
Sbjct: 1 aagctcaggagggatagcgccatgatgatcacattcgttatctat-tttttggcgctatc 59
Query: 75 catcctgagttt 86
||||||||||||
Sbjct: 60 catcctgagttt 71
>54848_vvi-miR390:pmrd
Length = 140
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccat 40
||||||||| |||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccat 33
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccat 40
||||||||| |||||||||||||||||||||||
Sbjct: 4 agaatctgttaagctcaggagggatagcgccat 36
>51716_ptc-miR390a:pmrd
Length = 119
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccat 40
||||||||| |||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccat 33
>48500_ghr-miR390c:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccat 40
||||||||| |||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccat 33
>48370_bna-miR390a:pmrd
Length = 144
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 4 gagaagaatctgtaaagctcaggagggatagcgccat 40
|||||| | ||||||||||||||||||||||||||||
Sbjct: 19 gagaagtagctgtaaagctcaggagggatagcgccat 55
>48575_gma-miR390b:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagc 35
||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>51719_ptc-miR390d:pmrd
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgcc 38
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
>51717_ptc-miR390b:pmrd
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgcc 38
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 tggcgctgtccatcctgagtttcattg 91
||||||| |||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtttcattg 103
>51718_ptc-miR390c:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 atctgtaaagctcaggagggatagcgccat 40
|||||| |||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccat 33
>46996_ath-miR390b:pmrd
Length = 120
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 taaagctcaggagggatagcgccat 40
|||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccat 37
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccat 40
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccat 40
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 4 aagctcaggagggatagcgcc 24
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 agctcaggagggatagcgcc 38
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 agctcaggagggatagcgcc 38
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
