miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48372_bna-miR390c:pmrd
Length = 128
Score = 254 bits (128), Expect = 1e-68
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 gcgtagtagagaagtagctgtaaagctcaggagggatagcgccatgactcatcaccatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgtagtagagaagtagctgtaaagctcaggagggatagcgccatgactcatcaccatta 60
Query: 61 ctatatgtctttgtatatgtaatggcgctatccatcctgagttccatggcttcttcttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctatatgtctttgtatatgtaatggcgctatccatcctgagttccatggcttcttcttgc 120
Query: 121 ttttatgt 128
||||||||
Sbjct: 121 ttttatgt 128
>48370_bna-miR390a:pmrd
Length = 144
Score = 111 bits (56), Expect = 1e-25
Identities = 107/124 (86%)
Strand = Plus / Plus
Query: 3 gtagtagagaagtagctgtaaagctcaggagggatagcgccatgactcatcaccattact 62
||||| |||||||||||||||||||||||||||||||||||||| |||| | | ||
Sbjct: 13 gtagttgagaagtagctgtaaagctcaggagggatagcgccatgtctcaccggtactata 72
Query: 63 atatgtctttgtatatgtaatggcgctatccatcctgagttccatggcttcttcttgctt 122
| |||| | | ||| | || |||||||||||||||||||||| |||||||||||||||||
Sbjct: 73 aaatgtttgtatatctatattggcgctatccatcctgagttctatggcttcttcttgctt 132
Query: 123 ttat 126
||||
Sbjct: 133 ttat 136
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 6 gtagagaagtagctgtaaagctcaggagggatagcgccatga 47
||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatga 42
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagtt 103
|||||||||||||||||||||
Sbjct: 67 tggcgctatccatcctgagtt 87
>46995_ath-miR390a:pmrd
Length = 107
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 6 gtagagaagtagctgtaaagctcaggagggatagcgccatga 47
||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatga 42
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagtt 103
|||||||||||||||||||||
Sbjct: 67 tggcgctatccatcctgagtt 87
>48371_bna-miR390b:pmrd
Length = 105
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 6 gtagagaagtagctgtaaagctcaggagggatagcgccat 45
||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccat 40
>46996_ath-miR390b:pmrd
Length = 120
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagttccatggcttcttctt 118
||||||||||||||||||||||||| ||||||||||
Sbjct: 85 tggcgctatccatcctgagttccatagcttcttctt 120
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 9 gagaagtagctgtaaagctcaggagggatagcgccatgactca 51
||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 1 gagaaatagctataaagctcaggagggatagcgccatggctca 43
>54848_vvi-miR390:pmrd
Length = 140
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatga 47
|||| |||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatga 35
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatga 47
|||| |||||||||||||||||||||||||
Sbjct: 9 ctgttaagctcaggagggatagcgccatga 38
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagttccatggcttct 114
|||||||||| ||||||||||| |||| ||||
Sbjct: 93 tggcgctatctatcctgagttctatgggttct 124
>51718_ptc-miR390c:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatga 47
|||| |||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatga 35
>51716_ptc-miR390a:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatga 47
|||| |||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatga 35
>48499_ghr-miR390b:pmrd
Length = 132
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 85 gcgctatccatcctgagttccatggcttcttcttgctt 122
||||||||||||||||||| ||| | ||||||||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttcttgctt 131
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatg 46
|||| ||||||||||||||||||||||||
Sbjct: 13 ctgttaagctcaggagggatagcgccatg 41
>48500_ghr-miR390c:pmrd
Length = 114
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatg 46
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
>48498_ghr-miR390a:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatg 46
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 85 gcgctatccatcctgagttccatggcttcttctt 118
||||||||||||||||||| ||| | ||||||||
Sbjct: 91 gcgctatccatcctgagtttcatcggttcttctt 124
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgccatga 47
|||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatga 25
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagtt 103
|||||||||||||||||||||
Sbjct: 50 tggcgctatccatcctgagtt 70
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgccat 45
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgccat 45
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
>48575_gma-miR390b:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagc 40
|||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagc 28
>51719_ptc-miR390d:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgcc 43
|||| |||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagtt 103
|||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtt 97
>51717_ptc-miR390b:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgcc 43
|||| |||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagttccatggctt 112
||||||||||||||||||||| ||| ||||
Sbjct: 77 tggcgctatccatcctgagtttcattgctt 106
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 4 aagctcaggagggatagcgcc 24
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagtt 103
|||||||||||||||||||||
Sbjct: 70 tggcgctatccatcctgagtt 90
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 agctcaggagggatagcgcc 43
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 agctcaggagggatagcgcc 43
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
