miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48395_bra-miR159a:pmrd
Length = 185
Score = 367 bits (185), Expect = e-102
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 1 aagtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagct 60
Query: 61 atgaatcccataagccctaatccttatatataaaaaggatttggttatatggcttacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgaatcccataagccctaatccttatatataaaaaggatttggttatatggcttacata 120
Query: 121 tctcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagct 180
Query: 181 ctaca 185
|||||
Sbjct: 181 ctaca 185
>48339_bna-miR159:pmrd
Length = 183
Score = 363 bits (183), Expect = e-101
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 3 gtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctat 60
Query: 63 gaatcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaatcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatc 120
Query: 123 tcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 180
Query: 183 aca 185
|||
Sbjct: 181 aca 183
>46931_ath-miR159a:pmrd
Length = 184
Score = 248 bits (125), Expect = 1e-66
Identities = 170/184 (92%), Gaps = 2/184 (1%)
Strand = Plus / Plus
Query: 3 gtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctat 62
|||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 1 gtagagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctat 60
Query: 63 gaatcccataagccctaatccttatatat--aaaaaggatttggttatatggcttacata 120
| ||||||||||||||||||||| || | ||||||||||||||||||||| || ||||
Sbjct: 61 ggatcccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcata 120
Query: 121 tctcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagct 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 121 tctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagct 180
Query: 181 ctac 184
||||
Sbjct: 181 ctac 184
>46932_ath-miR159b:pmrd
Length = 196
Score = 73.8 bits (37), Expect = 4e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 8 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 67
||||||| ||||||| ||| |||||||||||| ||| ||||||||||||||||| |||
Sbjct: 7 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 66
Query: 68 ccataagcc 76
|||||||||
Sbjct: 67 ccataagcc 75
Score = 69.9 bits (35), Expect = 6e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 117 catatctcaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 175
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180
Query: 176 gagctct 182
|||||||
Sbjct: 181 gagctct 187
>48539_gma-miR159a:pmrd
Length = 214
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 159 cttctttggattgaagggagctctaca 185
|||||||||||||||||||||||||||
Sbjct: 171 cttctttggattgaagggagctctaca 197
>54378_pvu-miR159:pmrd
Length = 174
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 cttctttggattgaagggagctctac 184
||||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctctac 174
>54377_pvu-miR159:pmrd
Length = 174
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 cttctttggattgaagggagctctac 184
||||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctctac 174
>48699_mtr-miR159a:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 160 ttctttggattgaagggagctcta 183
||||||||||||||||||||||||
Sbjct: 145 ttctttggattgaagggagctcta 168
>54777_vvi-miR159c:pmrd
Length = 190
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctctaca 182
>48701_mtr-miR159c:pmrd
Length = 44
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctaca 23
>48686_ltu-miR159:pmrd
Length = 345
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctaca 23
>54930_zma-miR159a:pmrd
Length = 246
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226
>54674_tae-miR159b:pmrd
Length = 255
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249
>54631_sof-miR159d:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54629_sof-miR159b:pmrd
Length = 266
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246
>54628_sof-miR159a:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54392_sar-miR159:pmrd
Length = 175
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>51338_pgl-miR159:pmrd
Length = 226
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctct 225
>48825_osa-miR159m:pmrd
Length = 249
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctct 248
>48824_osa-miR159f:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctaca 185
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
>48820_osa-miR159b:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctct 177
>48819_osa-miR159a:pmrd
Length = 272
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>48796_oru-miR159:pmrd
Length = 274
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>48728_mtr-miR319b:pmrd
Length = 42
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctaca 185
||||||||||||||||||||||
Sbjct: 1 ttggattgaagggagctctaca 22
>54540_sly-miR159:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctcta 183
|||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctcta 177
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctcta 183
|||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctcta 169
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttacatatctcaggagcttta 134
||||| ||||||||||||||||||
Sbjct: 104 ggcttgcatatctcaggagcttta 127
>51604_ptc-miR159c:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctcta 183
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttacatatctcaggagcttta 134
||||| ||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>51603_ptc-miR159b:pmrd
Length = 187
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctcta 183
|||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctcta 178
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttacatatctcaggagcttta 134
||||| ||||||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagcttta 136
>51602_ptc-miR159a:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctcta 183
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttacatatctcaggagcttta 134
||||| ||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>54937_zma-miR159m:pmrd
Length = 457
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54931_zma-miR159b:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 182 tttggattgaagggagctct 201
>54673_tae-miR159a:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>54653_spr-miR159:pmrd
Length = 392
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48657_hvv-miR159b:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48656_hvv-miR159a:pmrd
Length = 303
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
