miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48383_bna-miR2111b:pmrd
Length = 119
Score = 97.6 bits (49), Expect = 2e-21
Identities = 92/106 (86%), Gaps = 9/106 (8%)
Strand = Plus / Plus
Query: 7 gaactggtaatctgcatcctgaggtttaaaaatttataggcaattaaaacatgcaaatgt 66
||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 13 gaactggtaatctgcatcctgaggtttaaaaatacataggca-------catgcaaatgt 65
Query: 67 gtgtatggt--tttttaatcctcgggatacggattacctcttcctt 110
|||||| | ||||||||||||||||||| |||||||||||||||
Sbjct: 66 gtgtattatagtttttaatcctcgggatacagattacctcttcctt 111
>48382_bna-miR2111b:pmrd
Length = 119
Score = 97.6 bits (49), Expect = 2e-21
Identities = 92/106 (86%), Gaps = 9/106 (8%)
Strand = Plus / Plus
Query: 7 gaactggtaatctgcatcctgaggtttaaaaatttataggcaattaaaacatgcaaatgt 66
||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 13 gaactggtaatctgcatcctgaggtttaaaaatacataggca-------catgcaaatgt 65
Query: 67 gtgtatggt--tttttaatcctcgggatacggattacctcttcctt 110
|||||| | ||||||||||||||||||| |||||||||||||||
Sbjct: 66 gtgtattatagtttttaatcctcgggatacagattacctcttcctt 111
>48381_bna-miR2111a:pmrd
Length = 151
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 77 ttttaatcctcgggatacggattacctcttccttact 113
||||| |||||||||| ||||||||||||||||||||
Sbjct: 104 ttttagtcctcgggatgcggattacctcttccttact 140
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 ggtaatctgcatcctgaggtttaaa 36
|||||||||||||||||||||||||
Sbjct: 25 ggtaatctgcatcctgaggtttaaa 49
>48380_bna-miR2111a:pmrd
Length = 151
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 77 ttttaatcctcgggatacggattacctcttccttact 113
||||| |||||||||| ||||||||||||||||||||
Sbjct: 104 ttttagtcctcgggatgcggattacctcttccttact 140
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 ggtaatctgcatcctgaggtttaaa 36
|||||||||||||||||||||||||
Sbjct: 25 ggtaatctgcatcctgaggtttaaa 49
>53980_ptc-miRf12158-akr:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tggtaatctgcatcctgaggttt 33
|||||||||||||||||||||||
Sbjct: 7 tggtaatctgcatcctgaggttt 29
>53775_ptc-miRf11953-akr:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ggtaatctgcatcctgaggttt 33
||||||||||||||||||||||
Sbjct: 8 ggtaatctgcatcctgaggttt 29
