miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48423_cpa-miR162a:pmrd
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 agggtaaagtcactggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtaaagtcactggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaa 60
Query: 61 atcacagaacatgaatcgatcgataaacctctgcatccagcgttacccc 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcacagaacatgaatcgatcgataaacctctgcatccagcgttacccc 109
>48493_ghr-miR162a:pmrd
Length = 148
Score = 111 bits (56), Expect = 1e-25
Identities = 95/104 (91%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 2 gggtaaagtcactggaggcagcggttcatcgatctcttcctgggaa-tttggtgtga-aa 59
|||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| ||
Sbjct: 13 gggtaaagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaa 72
Query: 60 aatcacaga-acatgaatcgatcgataaacctctgcatccagcg 102
| |||| | ||||||||||||||||||||||||||||||||||
Sbjct: 73 taacacaaatacatgaatcgatcgataaacctctgcatccagcg 116
>54784_vvi-miR162:pmrd
Length = 103
Score = 93.7 bits (47), Expect = 3e-20
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 7 aagtcactggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaaatcaca 66
||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||| ||
Sbjct: 3 aagtcactggatgcagcggttcatcgatctcttcct--gaaattgttgtgaaaaa-agca 59
Query: 67 gaacatgaatcgatcgataaacctctgcatccagcgtt 104
|| || |||||| |||||||||||||||||||||||||
Sbjct: 60 gatcaagaatcggtcgataaacctctgcatccagcgtt 97
>54387_rco-miR162:pmrd
Length = 96
Score = 83.8 bits (42), Expect = 2e-17
Identities = 85/96 (88%), Gaps = 5/96 (5%)
Strand = Plus / Plus
Query: 11 cactggaggcagcggttcatcgatctcttcctgg--gaatttggtgtgaaa-aatcacag 67
|||||||||||||||||||||||||||||||||| || |||| ||||||| || | |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
Query: 68 aa--catgaatcgatcgataaacctctgcatccagc 101
|| ||||||||||||||||||||||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
>48545_gma-miR162a:pmrd
Length = 102
Score = 75.8 bits (38), Expect = 6e-15
Identities = 83/96 (86%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 7 aagtcactggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaaatcaca 66
||||||||||| ||||||||||||||||||||||||| | | | ||| || |||| |
Sbjct: 4 aagtcactggatgcagcggttcatcgatctcttcctg---aatcgttgtttaacatcaga 60
Query: 67 gaacatgaatcgatcgataaacctctgcatccagcg 102
| |||||||||||||||||||||||||||||||||
Sbjct: 61 -accatgaatcgatcgataaacctctgcatccagcg 95
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 11 cactggaggcagcggttcatcgatctcttcctgg 44
||||||||||||||||||||||||||||||||||
Sbjct: 97 cactggaggcagcggttcatcgatctcttcctgg 64
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 11 cactggaggcagcggttcatcgatctcttcctgg 44
||||||||||||||||||||||||||||||||||
Sbjct: 97 cactggaggcagcggttcatcgatctcttcctgg 64
>51616_ptc-miR162a:pmrd
Length = 107
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 11 cactggaggcagcggttcatcgatctcttcctgg 44
||||||||||||||||||||||||||||||||||
Sbjct: 9 cactggaggcagcggttcatcgatctcttcctgg 42
>48690_mdo-miR162:pmrd
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 13 ctggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaaatcacagaacat 72
||||||||| |||||||||||||| || || || |||| ||||| || ||||| |||
Sbjct: 1 ctggaggcatcggttcatcgatctgtttatgagattttgttgtgagtaaacacagttcat 60
Query: 73 gaatcgatcgataaacctctgcatccag 100
|||||| ||||||||||| |||||||||
Sbjct: 61 gaatcggtcgataaacctttgcatccag 88
>46937_ath-miR162a:pmrd
Length = 140
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 8 agtcactggaggcagcggttcatcgatctcttcctg 43
|||| |||||||||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 70 catgaatcgatcgataaacctctgcatccagcgtt 104
||||||| |||||||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccagcgtt 113
>48682_llu-miR162:pmrd
Length = 80
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 70 catgaatcgatcgataaacctctgcatccag 100
|||||||||||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatccag 80
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 73 gaatcgatcgataaacctctgcatccagcg 102
||||||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccagcg 13
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 7 aagtcactggaggcagcggttcatcgatctcttcctgggaat 48
||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 108 aagtcgctggaggcagcggttcatcgatcaattcctgtgaat 67
>46938_ath-miR162b:pmrd
Length = 111
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 73 gaatcgatcgataaacctctgcatccagcg 102
||||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagcg 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 7 aagtcactggaggcagcggttcatcgatctcttcctgggaat 48
||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 6 aagtcgctggaggcagcggttcatcgatcaattcctgtgaat 47
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 11 cactggaggcagcggttcatcgatctcttcctg 43
|||||||||||||||||||||||||| ||||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcctg 64
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 68 aacatgaatcgatcgataaacctctgcatccag 100
|||| ||| ||||||||||||||||||||||||
Sbjct: 39 aacacgaaccgatcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 11 cactggaggcagcggttcatcgatctcttcctg 43
|||||||||||||||||||||||||| ||||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcctg 66
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 68 aacatgaatcgatcgataaacctctgcatccag 100
|||| ||| ||||||||||||||||||||||||
Sbjct: 41 aacacgaaccgatcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 11 cactggaggcagcggttcatcgatctcttcctg 43
|||||||||||||||||||||||||| ||||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcctg 66
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 68 aacatgaatcgatcgataaacctctgcatccag 100
|||| ||| ||||||||||||||||||||||||
Sbjct: 41 aacacgaaccgatcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 11 cactggaggcagcggttcatcgatctcttcctg 43
|||||||||||||||||||||||||| ||||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcctg 64
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 68 aacatgaatcgatcgataaacctctgcatccag 100
|||| ||| ||||||||||||||||||||||||
Sbjct: 39 aacacgaaccgatcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 11 cactggaggcagcggttcatcgatctcttcctg 43
|||||||||||||||||||||||||| ||||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcctg 41
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 68 aacatgaatcgatcgataaacctctgcatccag 100
|||| ||| ||||||||||||||||||||||||
Sbjct: 66 aacacgaaccgatcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 11 cactggaggcagcggttcatcgatctcttcctg 43
|||||||||||||||||||||||||| ||||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcctg 41
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 68 aacatgaatcgatcgataaacctctgcatccag 100
|||| ||| ||||||||||||||||||||||||
Sbjct: 66 aacacgaaccgatcgataaacctctgcatccag 98
>48707_mtr-miR162d:pmrd
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 68 aacatgaatcgatcgataaacctctgcatccag 100
||||||||||| |||||||||||||||||||||
Sbjct: 55 aacatgaatcggtcgataaacctctgcatccag 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 13 ctggaggcagcggttcatcgatctcttcctg 43
||||| |||||||||||||||||| ||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctg 31
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 73 gaatcgatcgataaacctctgcatccag 100
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48706_mtr-miR162c:pmrd
Length = 86
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 68 aacatgaatcgatcgataaacctctgcatcca 99
||||||||||| ||||||||||||||||||||
Sbjct: 32 aacatgaatcggtcgataaacctctgcatcca 1
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 13 ctggaggcagcggttcatcgatctcttcctg 43
||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56
>48705_mtr-miR162b:pmrd
Length = 85
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 68 aacatgaatcgatcgataaacctctgcatcca 99
||||||||||| ||||||||||||||||||||
Sbjct: 54 aacatgaatcggtcgataaacctctgcatcca 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 tggaggcagcggttcatcgatctcttcctg 43
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 73 gaatcgatcgataaacctctgcatccag 100
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 73 gaatcgatcgataaacctctgcatccag 100
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 73 gaatcgatcgataaacctctgcatccag 100
|||||||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 73 gaatcgatcgataaacctctgcatccag 100
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>48685_lsa-miR162:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 tcgataaacctctgcatccagcg 102
|||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcg 23
>48546_gma-miR162m:pmrd
Length = 367
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 tcgataaacctctgcatccagcg 102
|||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcg 23
