miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 40/43 (93%), Gaps = 3/43 (6%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt---tttcttgcatat 44
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 gtgacagaagagagtgagcacacatggtggctttcttgcatat 44
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 40/43 (93%), Gaps = 3/43 (6%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt---tttcttgcatat 44
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 gtgacagaagagagtgagcacacatggtggctttcttgcatat 44
>46915_ath-miR156f:pmrd
Length = 132
Score = 58.0 bits (29), Expect = 1e-09
Identities = 40/43 (93%), Gaps = 3/43 (6%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt---tttcttgcatat 44
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 20 gtgacagaagagagtgagcacacatggtggctttcttgcatat 62
>46914_ath-miR156e:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt--tttcttgcat 42
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 6 gtgacagaagagagtgagcacacatggtggtttcttgcat 45
>54768_vvi-miR156c:pmrd
Length = 104
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt 32
||||||||||||||||||||||||||||
Sbjct: 10 gtgacagaagagagtgagcacacatggt 37
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 62 agctctgtgtgctcaccctctatctgtc 89
||||||| |||||||| |||||||||||
Sbjct: 64 agctctgcgtgctcactctctatctgtc 91
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/39 (94%), Gaps = 2/39 (5%)
Strand = Plus / Minus
Query: 6 tgacagaagagagtgagcacacatggt--tttcttgcat 42
||||||||||||||||||||||||||| ||||||||||
Sbjct: 96 tgacagaagagagtgagcacacatggtggtttcttgcat 58
>54924_zma-miR156o:pmrd
Length = 99
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggt 32
|||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacatggt 27
>54913_zma-miR156c:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggt 32
|||||||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacacatggt 47
>54395_sbi-miR156c:pmrd
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggt 32
|||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacatggt 27
>51354_ppr-miR156:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggt 32
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>48803_osa-miR156c:pmrd
Length = 149
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggt 32
|||||||||||||||||||||||||||
Sbjct: 29 tgacagaagagagtgagcacacatggt 55
>48795_oru-miR156:pmrd
Length = 93
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggt 32
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>48489_ghr-miR156b:pmrd
Length = 113
Score = 52.0 bits (26), Expect = 7e-08
Identities = 76/89 (85%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt--tttcttgcat-atcgatac-ttgatgcttt 60
|||||||||||||||||||||||| ||| |||||||||| | || | || ||||||
Sbjct: 2 gtgacagaagagagtgagcacacagggtactttcttgcatgcttgagcctttcatgcttg 61
Query: 61 tagctctgtgtgctcaccctctatctgtc 89
||||||| ||||||||||||||||||||
Sbjct: 62 aagctctgcgtgctcaccctctatctgtc 90
>48488_ghr-miR156a:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 7e-08
Identities = 76/89 (85%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt--tttcttgcat-atcgatac-ttgatgcttt 60
|||||||||||||||||||||||| ||| |||||||||| | || | || ||||||
Sbjct: 8 gtgacagaagagagtgagcacacagggtactttcttgcatgcttgagcctttcatgcttg 67
Query: 61 tagctctgtgtgctcaccctctatctgtc 89
||||||| ||||||||||||||||||||
Sbjct: 68 aagctctgcgtgctcaccctctatctgtc 96
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/40 (92%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt--tttcttgcat 42
|||||||||||||||||||||||| ||| ||||||||||
Sbjct: 2 gtgacagaagagagtgagcacacagggtactttcttgcat 41
>51592_ptc-miR156b:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/40 (92%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggt--tttcttgcat 42
|||||||||||||||||||||||| ||| ||||||||||
Sbjct: 10 gtgacagaagagagtgagcacacagggtactttcttgcat 49
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtt 33
||||||||||||||||||||||| |||||
Sbjct: 6 gtgacagaagagagtgagcacacgtggtt 34
>48801_osa-miR156a:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacacatggtt 33
||||||||||||||||||||||| |||||
Sbjct: 6 gtgacagaagagagtgagcacacgtggtt 34
>46916_ath-miR156g:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gacagaagagagtgagcacacatgg 31
|||||||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacacatgg 36
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/39 (92%), Gaps = 2/39 (5%)
Strand = Plus / Minus
Query: 6 tgacagaagagagtgagcacacatggt--tttcttgcat 42
||||||||||||||||||||||| ||| ||||||||||
Sbjct: 93 tgacagaagagagtgagcacacagggtactttcttgcat 55
>51594_ptc-miR156d:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/39 (92%), Gaps = 2/39 (5%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggt--tttcttgcat 42
||||||||||||||||||||||| ||| ||||||||||
Sbjct: 11 tgacagaagagagtgagcacacagggtactttcttgcat 49
>48490_ghr-miR156c:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 62 agctctgtgtgctcaccctctatctgtc 89
|||| |||||||||||||||||||||||
Sbjct: 63 agctatgtgtgctcaccctctatctgtc 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 cagaagagagtgagcacacatggtt 33
|||||||||||||||||||| ||||
Sbjct: 6 cagaagagagtgagcacacagggtt 30
>54927_zma-miR156r:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacacatggt 32
||||||||||||||| |||||||||||
Sbjct: 1 tgacagaagagagtgggcacacatggt 27
>54922_zma-miR156m:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>54919_zma-miR156i:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 12 gtgacagaagagagtgagcacac 34
>54918_zma-miR156h:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 19 gtgacagaagagagtgagcacac 41
>54915_zma-miR156e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 19 gtgacagaagagagtgagcacac 41
>54912_zma-miR156b:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacaca 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 gtgctcaccctctatctgtc 89
||||||||||||||||||||
Sbjct: 84 gtgctcaccctctatctgtc 103
>54911_zma-miR156a:pmrd
Length = 152
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacaca 40
>54767_vvi-miR156b:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>54401_sbi-miR156i:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>54400_sbi-miR156h:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>54399_sbi-miR156g:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>54394_sbi-miR156b:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 8 tgacagaagagagtgagcacaca 30
>51596_ptc-miR156f:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51595_ptc-miR156e:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51593_ptc-miR156c:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51591_ptc-miR156a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 89 tgacagaagagagtgagcacaca 67
>48809_osa-miR156i:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 2 gtgacagaagagagtgagcacac 24
>48807_osa-miR156g:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacaca 26
>48806_osa-miR156f:pmrd
Length = 186
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacaca 26
>48805_osa-miR156e:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcacac 27
|||||||||||||||||||||||
Sbjct: 9 gtgacagaagagagtgagcacac 31
>48802_osa-miR156b:pmrd
Length = 176
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 43 tgacagaagagagtgagcacaca 65
>48652_hvv-miR156a:pmrd
Length = 394
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>48336_bna-miR156a:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 6 tgacagaagagagtgagcacaca 28
>46913_ath-miR156d:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacaca 40
>46912_ath-miR156c:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 12 tgacagaagagagtgagcacaca 34
>46910_ath-miR156a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacaca 28
|||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacaca 43
>54923_zma-miR156n:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54914_zma-miR156d:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 16 tgacagaagagagtgagcacac 37
>54656_stu-miR156a:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54402_sbi-miR157:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>54393_sbi-miR156a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>51357_ppt-miR156c:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 9 gtgacagaagagagtgagcaca 30
>51355_ppt-miR156a:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gtgacagaagagagtgagcaca 26
||||||||||||||||||||||
Sbjct: 20 gtgacagaagagagtgagcaca 41
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 gaagagagtgagcacacatgg 31
|||||||||||||||||||||
Sbjct: 91 gaagagagtgagcacacatgg 71
>48813_osa-miR156m:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48810_osa-miR156j:pmrd
Length = 165
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 42 tgacagaagagagtgagcacac 63
>48808_osa-miR156h:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacac 30
>48804_osa-miR156d:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>48491_ghr-miR156d:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacac 30
>48425_cpt-miR156a:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagagagtgagcacac 27
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
