miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48532_gma-miR156e:pmrd
Length = 124
Score = 119 bits (60), Expect = 4e-28
Identities = 86/92 (93%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcactgacgatgaaatgcatgat-gggactctgcatctcac 62
|||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||
Sbjct: 19 tgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatg-gcatctcac 77
Query: 63 tcctttgtgctctctagtcttctgtcatcatc 94
||||||||||||||||||||||||||||||||
Sbjct: 78 tcctttgtgctctctagtcttctgtcatcatc 109
>51598_ptc-miR156h:pmrd
Length = 103
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctcact 63
|||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 9 tgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcact 68
Query: 64 cctttgtgctctctagtcttctgtcatca 92
|||||||||||||||||||||||||||||
Sbjct: 69 cctttgtgctctctagtcttctgtcatca 97
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 109 bits (55), Expect = 4e-25
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 5 gttgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctcactc 64
||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 gttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcactc 60
Query: 65 ctttgtgctctctagtcttctgtcatc 91
|||||||||||||||||||||||||||
Sbjct: 61 ctttgtgctctctagtcttctgtcatc 87
>48537_gma-miR157c:pmrd
Length = 84
Score = 105 bits (53), Expect = 6e-24
Identities = 79/85 (92%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 6 ttgacagaagatagagagcactgacgatgaaatgcatgat-gggactctgcatctcactc 64
|||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||
Sbjct: 84 ttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatg-gcatctcactc 26
Query: 65 ctttgtgctctctagtcttctgtca 89
|||||||||||||||||||||||||
Sbjct: 25 ctttgtgctctctagtcttctgtca 1
>51597_ptc-miR156g:pmrd
Length = 103
Score = 103 bits (52), Expect = 2e-23
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 1 tgttgttgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctc 60
|||||||||||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 6 tgttgttgacagaagatagagagcacagatgatgaaatgcatggagcttaattgcatctc 65
Query: 61 actcctttgtgctctctagtcttctgtcatca 92
||||||||||||||||||||||||||||||||
Sbjct: 66 actcctttgtgctctctagtcttctgtcatca 97
>51600_ptc-miR156j:pmrd
Length = 100
Score = 97.6 bits (49), Expect = 1e-21
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tgttgttgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctc 60
|||||||||||||||||||||||||| || ||||| ||||| |||| |||||||||| |
Sbjct: 6 tgttgttgacagaagatagagagcacagatgatgatatgca--atgg-actctgcatccc 62
Query: 61 actcctttgtgctctctagtcttctgtcatca 92
|||||||||||||||||| ||||||||||||
Sbjct: 63 actcctttgtgctctctatgcttctgtcatca 94
>54772_vvi-miR156g:pmrd
Length = 103
Score = 93.7 bits (47), Expect = 2e-20
Identities = 81/92 (88%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 1 tgttgttgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctc 60
|||||||||||||||||||||||||| || ||||| |||||| || | ||||||||
Sbjct: 6 tgttgttgacagaagatagagagcacagatgatgatgtgcatg----gagtttgcatctc 61
Query: 61 actcctttgtgctctctagtcttctgtcatca 92
||||||||||||||||||| ||||||||||||
Sbjct: 62 actcctttgtgctctctagacttctgtcatca 93
>54774_vvi-miR156i:pmrd
Length = 103
Score = 91.7 bits (46), Expect = 9e-20
Identities = 80/91 (87%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctca 61
||||||||||||||||||||||||| || ||||||||||| | || | ||||||||
Sbjct: 7 gttgttgacagaagatagagagcacagatgatgaaatgcaag----gagccagcatctca 62
Query: 62 ctcctttgtgctctctagtcttctgtcatca 92
||||||||||||||||| |||||||||||||
Sbjct: 63 ctcctttgtgctctctattcttctgtcatca 93
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 91.7 bits (46), Expect = 9e-20
Identities = 80/89 (89%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctcact 63
||||||||||||||||||||||| || ||||| ||||| |||| |||||||||| ||||
Sbjct: 1 tgttgacagaagatagagagcacagatgatgatatgca--atgg-actctgcatcccact 57
Query: 64 cctttgtgctctctagtcttctgtcatca 92
||||||||||||||| ||||||||||||
Sbjct: 58 cctttgtgctctctatgcttctgtcatca 86
>46862_aqc-miR156b:pmrd
Length = 83
Score = 91.7 bits (46), Expect = 9e-20
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctcactcct 66
|||||||||||||||||||| || ||||| ||||||| | || ||||||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatgatatgcatg--gagagtctgcatctcactcct 58
Query: 67 ttgtgctctctagtcttctgtcatc 91
|||||||||||| |||||||||||
Sbjct: 59 ttgtgctctctatgcttctgtcatc 83
>48697_mtr-miR156h:pmrd
Length = 94
Score = 75.8 bits (38), Expect = 5e-15
Identities = 79/90 (87%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcactgacgatgaaatgcat-gatgggactctgcatctcac 62
||||||||||||||||||||||| || |||||||||||| || || | | ||||||||
Sbjct: 4 tgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaat-ggcatctcat 62
Query: 63 tcctttgtgctctctagtcttctgtcatca 92
||||||||||||| || |||||||||||||
Sbjct: 63 tcctttgtgctctttattcttctgtcatca 92
>51599_ptc-miR156i:pmrd
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 78/92 (84%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tgttgttgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctc 60
|||||||||||||||||||||||||| || |||| |||| | ||||||| |||||
Sbjct: 6 tgttgttgacagaagatagagagcacagatgatgttttgcagta---gactctggatctc 62
Query: 61 actcctttgtgctctctagtcttctgtcatca 92
|||||||||||||||||| |||||| |||||
Sbjct: 63 actcctttgtgctctctatgcttctgccatca 94
>46925_ath-miR157b:pmrd
Length = 132
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 53 tgcatctcactcctttgtgctctctagtcttctgtcatca 92
||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 72 tgcatcttactcctttgtgctctctagccttctgtcatca 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcac 26
|||||||||||||||||||||||
Sbjct: 17 tgttgacagaagatagagagcac 39
>46924_ath-miR157a:pmrd
Length = 98
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 53 tgcatctcactcctttgtgctctctagtcttctgtcatca 92
||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 57 tgcatcttactcctttgtgctctctagccttctgtcatca 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcactgacgatga 35
||||||||||||||||||||||| || |||||
Sbjct: 2 tgttgacagaagatagagagcacagatgatga 33
>48631_gra-miR157b:pmrd
Length = 91
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 53 tgcatctcactcctttgtgctctctagtcttctgtcatcatc 94
|||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 50 tgcatcccactcctttgtgctctctatgcttctgtcatcatc 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcac 26
|||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcac 25
>48695_mtr-miR156e:pmrd
Length = 172
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcactgacgatgaaatgcat 42
||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 2 gttgttgacagaagatagagagcacagatgatgatatgcat 42
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 53 tgcatctcactcctttgtgctctctagtcttctgtcatca 92
||||| |||||||||||||||||||| ||||||||||||
Sbjct: 131 tgcatatcactcctttgtgctctctatgcttctgtcatca 170
>48531_gma-miR156d:pmrd
Length = 151
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcactgacgatgaaatgcat 42
||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 17 gttgttgacagaagatagagagcacagatgatgatatgcat 57
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 53 tgcatctcactcctttgtgctctctagtcttctgtcatca 92
||||||| |||||||||||||||||| ||||||||||||
Sbjct: 95 tgcatcttactcctttgtgctctctatacttctgtcatca 134
>48393_bra-miR157a:pmrd
Length = 149
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcactgacgatgaaatgca 41
|||||||||||||||||||||||||| | ||||| |||||
Sbjct: 10 gttgttgacagaagatagagagcactaaggatgacatgca 49
>48384_bol-miR157a:pmrd
Length = 106
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcactgacgatgaaatgca 41
|||||||||||||||||||||||||| | ||||| |||||
Sbjct: 2 gttgttgacagaagatagagagcactaaggatgacatgca 41
>48338_bna-miR156c:pmrd
Length = 155
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcactgacgatgaaatgca 41
|||||||||||||||||||||||||| | ||||| |||||
Sbjct: 14 gttgttgacagaagatagagagcactaaggatgacatgca 53
>48337_bna-miR156b:pmrd
Length = 208
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcactgacgatgaaatgca 41
|||||||||||||||||||||||||| | ||||| |||||
Sbjct: 21 gttgttgacagaagatagagagcactaaggatgacatgca 60
>46926_ath-miR157c:pmrd
Length = 217
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcactgacgatgaaatgca 41
|||||||||||||||||||||||||| | ||||| |||||
Sbjct: 20 gttgttgacagaagatagagagcactaaggatgacatgca 59
>48630_gra-miR157a:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcac 26
|||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcac 25
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 tgcatctcactcctttgtgctctctagtcttctgtcatca 92
|||||| |||||||||||||||| || ||||||||||||
Sbjct: 60 tgcatcccactcctttgtgctctttatgcttctgtcatca 99
>48698_mtr-miR157:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 tcctttgtgctctctagtcttctgtcat 90
||||||||||||||||| ||||||||||
Sbjct: 84 tcctttgtgctctctagacttctgtcat 111
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcactgacgatgaaatgcat 42
|||||||||||||||| ||||| | ||||| ||||||
Sbjct: 1 ttgacagaagatagagggcactaaggatgatatgcat 37
>48696_mtr-miR156f:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 ttgttgacagaagatagagagcac 26
||||||||||||||||||||||||
Sbjct: 3 ttgttgacagaagatagagagcac 26
>54771_vvi-miR156f:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcac 26
|||||||||||||||||||||||
Sbjct: 9 tgttgacagaagatagagagcac 31
>54661_stu-miR157a:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcactgacgatgaaatgc 40
|||||||||||||||||||||| | ||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>54532_sly-miR156a:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcactgacgatgaaatgc 40
|||||||||||||||||||||| | ||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>48530_gma-miR156c:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgttgacagaagatagagagcac 26
|||||||||||||||||||||||
Sbjct: 144 tgttgacagaagatagagagcac 166
>46857_ahy-miR157k:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 68 tgtgctctctagtcttctgtcatcatc 94
||||||||||| |||||||||||||||
Sbjct: 84 tgtgctctctactcttctgtcatcatc 110
>48790_nta-miR157:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcactgacgatga 35
||||||||||||||||||||| || |||||
Sbjct: 1 ttgacagaagatagagagcacagatgatga 30
>46927_ath-miR157d:pmrd
Length = 221
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 gttgttgacagaagatagagagcact 27
|||| |||||||||||||||||||||
Sbjct: 19 gttgctgacagaagatagagagcact 44
>46861_aqc-miR156a:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 68/83 (81%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcactgacgatgaaatgcatgatgggactctgcatctcactcct 66
|||||||||||||||||||| || || ||| |||||| || | |||||||| | ||
Sbjct: 1 tgacagaagatagagagcacagatgacgaattgcatg----gagtttgcatctcgatact 56
Query: 67 ttgtgctctctagtcttctgtca 89
|||||||||||| |||||||||
Sbjct: 57 ttgtgctctctatgcttctgtca 79
>54766_vvi-miR156a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 68 tgtgctctctagtcttctgtcatcatcac 96
|||||||||| |||||||||||||||||
Sbjct: 71 tgtgctctctcttcttctgtcatcatcac 99
>54570_smo-miR156b:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcactgacg 31
|||||||||||||||||||| ||||
Sbjct: 12 tgacagaagatagagagcacagacg 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 69 gtgctctctagtcttctgtcatca 92
|||||||||| |||||||||||||
Sbjct: 80 gtgctctctattcttctgtcatca 103
>54534_sly-miR156c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcac 26
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcac 26
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48675_lja-miR157a:pmrd
Length = 58
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcac 26
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48642_han-miR157a:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagcac 26
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54537_sly-miR157c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>51552_pta-miR156b:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcac 26
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51551_pta-miR156a:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 tgacagaagatagagagcac 26
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51323_pco-miR157:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttgacagaagatagagagca 25
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
