miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>51603_ptc-miR159b:pmrd
          Length = 187

 Score =  133 bits (67), Expect = 5e-32
 Identities = 151/176 (85%), Gaps = 6/176 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
           ||||||||||||||||||||||||||| | || || ||||||||| ||||||||||||||
Sbjct: 8   gagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagcta 67

                                                                       
Query: 61  tggatcccacagccctataagca-gagattataattttggataggcttgtggcttgcata 119
           || ||||||||||||||| | ||  ||    | ||||| ||| ||| || ||||||||||
Sbjct: 68  tgaatcccacagccctatcaccatcag----tcatttt-gatgggcctgcggcttgcata 122

                                                                   
Query: 120 tctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 175
           |||||||||||| |||||||  | ||||||| || |||||||||||||||||||||
Sbjct: 123 tctcaggagctttattacctaatgttagatctttttttggattgaagggagctcta 178




>54777_vvi-miR159c:pmrd
          Length = 190

 Score =  131 bits (66), Expect = 2e-31
 Identities = 152/178 (85%), Gaps = 2/178 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
           ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||  ||
Sbjct: 6   gagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactta 65

                                                                       
Query: 61  tggatcccacagccctataagcagagattataattttggataggcttgtggcttgcatat 120
           ||||||||||||||||||      |          |||||||||||||||||||||||||
Sbjct: 66  tggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcatat 125

                                                                     
Query: 121 ctcaggagcttcatta-ccttgtattagatccttgtttggattgaagggagctctaca 177
           |||||||||| ||||| ||  || ||||||||||||||||||||||||||||||||||
Sbjct: 126 ctcaggagctgcattatccaagt-ttagatccttgtttggattgaagggagctctaca 182




>51602_ptc-miR159a:pmrd
          Length = 183

 Score =  103 bits (52), Expect = 4e-23
 Identities = 146/175 (83%), Gaps = 8/175 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
           ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||
Sbjct: 8   gagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagcta 67

                                                                       
Query: 61  tggatcccacagccctataagcagagattataattttggataggcttgtggcttgcatat 120
           ||||| |||||| |||||        || | | |   ||||||| ||| |||||||||||
Sbjct: 68  tggat-ccacagtcctat------ctatca-actgaaggataggtttgcggcttgcatat 119

                                                                  
Query: 121 ctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 175
           ||||||||||| ||| |||  | |||||||| | |||||||||||||||||||||
Sbjct: 120 ctcaggagctttattgcctaatgttagatccctttttggattgaagggagctcta 174




>52093_ptc-miRf10271-akr:pmrd
          Length = 174

 Score =  101 bits (51), Expect = 2e-22
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
          ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||
Sbjct: 3  gagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagcta 62

                 
Query: 61 tggatcc 67
          |||||||
Sbjct: 63 tggatcc 69




>51604_ptc-miR159c:pmrd
          Length = 183

 Score =  101 bits (51), Expect = 2e-22
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
          ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||
Sbjct: 8  gagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagcta 67

                 
Query: 61 tggatcc 67
          |||||||
Sbjct: 68 tggatcc 74




>54378_pvu-miR159:pmrd
          Length = 174

 Score = 99.6 bits (50), Expect = 7e-22
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                      
Query: 3  gtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatg 62
          |||||||||||||||||||||| |||||||||  ||||| |||||||||||| |||||||
Sbjct: 1  gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60

                    
Query: 63 gatcccacag 72
          ||||||||||
Sbjct: 61 gatcccacag 70




>54377_pvu-miR159:pmrd
          Length = 174

 Score = 99.6 bits (50), Expect = 7e-22
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                      
Query: 3  gtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatg 62
          |||||||||||||||||||||| |||||||||  ||||| |||||||||||| |||||||
Sbjct: 1  gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60

                    
Query: 63 gatcccacag 72
          ||||||||||
Sbjct: 61 gatcccacag 70




>48539_gma-miR159a:pmrd
          Length = 214

 Score = 93.7 bits (47), Expect = 4e-20
 Identities = 65/71 (91%)
 Strand = Plus / Plus

                                                                      
Query: 2  agtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctat 61
          ||||||||||||||||||||||| |||||||||  |||||  ||||||||||| ||||||
Sbjct: 19 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 78

                     
Query: 62 ggatcccacag 72
          |||||||||||
Sbjct: 79 ggatcccacag 89



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 150 ccttgtttggattgaagggagctctaca 177
           |||| |||||||||||||||||||||||
Sbjct: 170 ccttctttggattgaagggagctctaca 197




>48701_mtr-miR159c:pmrd
          Length = 44

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 155 tttggattgaagggagctctacatct 180
           ||||||||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctctacatct 26




>48728_mtr-miR319b:pmrd
          Length = 42

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 156 ttggattgaagggagctctacatct 180
           |||||||||||||||||||||||||
Sbjct: 1   ttggattgaagggagctctacatct 25




>54931_zma-miR159b:pmrd
          Length = 221

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 153 tgtttggattgaagggagctctacatct 180
           |||||||||||||||||||||| |||||
Sbjct: 180 tgtttggattgaagggagctctgcatct 207




>54540_sly-miR159:pmrd
          Length = 177

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 44 attgagctgctgagctatggatcccacagccctat 78
          ||||||||||||| |||||||| || |||||||||
Sbjct: 41 attgagctgctgacctatggattcctcagccctat 75



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 55/65 (84%), Gaps = 2/65 (3%)
 Strand = Plus / Plus

                                                                       
Query: 113 ttgcatatctcaggagcttcatt--accttgtattagatccttgtttggattgaagggag 170
           |||||||| |||||||||| |||  ||| | | || |||| || ||||||||||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 172

                
Query: 171 ctcta 175
           |||||
Sbjct: 173 ctcta 177




>48686_ltu-miR159:pmrd
          Length = 345

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 155 tttggattgaagggagctctaca 177
           |||||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctctaca 23




>48395_bra-miR159a:pmrd
          Length = 185

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 155 tttggattgaagggagctctaca 177
           |||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctaca 185




>48339_bna-miR159:pmrd
          Length = 183

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 155 tttggattgaagggagctctaca 177
           |||||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctctaca 183




>54674_tae-miR159b:pmrd
          Length = 255

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 155 tttggattgaagggagctctacatct 180
           |||||||||||||||||||| |||||
Sbjct: 230 tttggattgaagggagctctgcatct 255




>54673_tae-miR159a:pmrd
          Length = 177

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 153 tgtttggattgaagggagctct 174
           ||||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctct 173




>48824_osa-miR159f:pmrd
          Length = 188

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 156 ttggattgaagggagctctaca 177
           ||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180




>48820_osa-miR159b:pmrd
          Length = 188

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 155 tttggattgaagggagctctacatct 180
           |||||||||||||||||||| |||||
Sbjct: 158 tttggattgaagggagctctgcatct 183




>48819_osa-miR159a:pmrd
          Length = 272

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 155 tttggattgaagggagctctacatct 180
           |||||||||||||||||||| |||||
Sbjct: 242 tttggattgaagggagctctgcatct 267