miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54780_vvi-miR160c:pmrd
Length = 106
Score = 81.8 bits (41), Expect = 8e-17
Identities = 82/93 (88%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 ggttatgcctggctccctgtatgccacaagctagagttcattcccttccatggattggct 60
|||| ||||||||||||||||||||||| | ||||| || |||||| | |||||||||
Sbjct: 6 ggttgtgcctggctccctgtatgccacacg-tagagaccactccctttcccggattggct 64
Query: 61 att-gccggtggcgtgcgaggagccaagcatac 92
||| || ||||||||||||||||||||||||||
Sbjct: 65 atttgcgggtggcgtgcgaggagccaagcatac 97
>51608_ptc-miR160a:pmrd
Length = 102
Score = 79.8 bits (40), Expect = 3e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 53 gattggctattgccggtggcgtgcgaggagccaagcatactctc 96
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 58 gattggctgttgccggtggcgtgcgaggagccaagcatactctc 101
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 71.9 bits (36), Expect = 8e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 53 gattggctattgccggtggcgtgcgaggagccaagcatactctc 96
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 60 gattggctgctgccggtggcgtgcgaggagccaagcatactctc 103
>51611_ptc-miR160d:pmrd
Length = 103
Score = 71.9 bits (36), Expect = 8e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 53 gattggctattgccggtggcgtgcgaggagccaagcatactctc 96
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 59 gattggctgctgccggtggcgtgcgaggagccaagcatactctc 102
>48791_oba-miR160:pmrd
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggtggcgtgcgaggagccaagcatac 92
||||||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagcatac 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>46936_ath-miR160c:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 gttatgcctggctccctgtatgccac 27
||||||||||||||||||||||||||
Sbjct: 1 gttatgcctggctccctgtatgccac 26
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccacaag 30
|||||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccacaag 29
>46935_ath-miR160b:pmrd
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccacaag 30
|||||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccacaag 29
>54942_zma-miR160e:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgccac 27
||||||||||||||||||||||||
Sbjct: 7 tatgcctggctccctgtatgccac 30
>54941_zma-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgccac 27
||||||||||||||||||||||||
Sbjct: 19 tatgcctggctccctgtatgccac 42
>54675_tae-miR160:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgccac 27
||||||||||||||||||||||||
Sbjct: 20 tatgcctggctccctgtatgccac 43
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tggcgtgcgaggagccaagcat 90
||||||||||||||||||||||
Sbjct: 91 tggcgtgcgaggagccaagcat 112
>48829_osa-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgccac 27
||||||||||||||||||||||||
Sbjct: 6 tatgcctggctccctgtatgccac 29
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tggcgtgcgaggagccaagcat 90
||||||||||||||||||||||
Sbjct: 117 tggcgtgcgaggagccaagcat 138
>54947_zma-miR160m:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccaca 28
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>54946_zma-miR160i:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 atgcctggctccctgtatgccac 27
|||||||||||||||||||||||
Sbjct: 1 atgcctggctccctgtatgccac 23
>54945_zma-miR160h:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccaca 28
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>54944_zma-miR160g:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccaca 28
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>54939_zma-miR160b:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccaca 28
|||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccaca 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 ggtggcgtgcgaggagccaagcat 90
|||||||||| |||||||||||||
Sbjct: 79 ggtggcgtgcaaggagccaagcat 102
>54938_zma-miR160a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccaca 28
|||||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgccaca 32
>54783_vvi-miR160f:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgcca 26
|||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgcca 26
|||||||||||||||||||||||
Sbjct: 18 tatgcctggctccctgtatgcca 40
>54405_sbi-miR160b:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccaca 28
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>54404_sbi-miR160a:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccaca 28
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>51334_pga-miR160:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccaca 28
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>48826_osa-miR160a:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccaca 28
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 ggtggcgtgcgaggagccaagcat 90
|||||||||| |||||||||||||
Sbjct: 63 ggtggcgtgcaaggagccaagcat 86
>48658_hvv-miR160a:pmrd
Length = 344
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgcca 26
|||||||||||||||||||||||
Sbjct: 322 tatgcctggctccctgtatgcca 344
>48397_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgcca 26
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgcca 26
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgcca 26
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgcca 26
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>54943_zma-miR160f:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgcc 25
||||||||||||||||||||||
Sbjct: 19 tatgcctggctccctgtatgcc 40
>54940_zma-miR160c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>54781_vvi-miR160d:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 atgcctggctccctgtatgcca 26
||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcca 31
>54759_ttu-miR160a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54408_sbi-miR160e:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54407_sbi-miR160d:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tggcgtgcgaggagccaagca 89
|||||||||||||||||||||
Sbjct: 80 tggcgtgcgaggagccaagca 100
>54406_sbi-miR160c:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>48833_osa-miR160n:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tggcgtgcgaggagccaagcat 90
||||||||||||||||||||||
Sbjct: 110 tggcgtgcgaggagccaagcat 131
>48832_osa-miR160m:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48830_osa-miR160e:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tatgcctggctccctgtatgcc 25
||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcc 30
>48828_osa-miR160c:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>48827_osa-miR160b:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgccac 27
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 ggtggcgtgcgaggagccaagcat 90
|||||||||| |||||||||||||
Sbjct: 89 ggtggcgtgcaaggagccaagcat 112
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgcca 26
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51610_ptc-miR160c:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgcca 26
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgcca 26
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 gcctggctccctgtatgccac 27
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgcca 26
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgcca 26
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgcca 26
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48635_gra-miR160b:pmrd
Length = 293
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 atgcctggctccctgtatgcc 25
|||||||||||||||||||||
Sbjct: 272 atgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 atgcctggctccctgtatgcc 25
|||||||||||||||||||||
Sbjct: 85 atgcctggctccctgtatgcc 105
>48542_gma-miR160a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgcca 26
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>48306_bdi-miR160:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 atgcctggctccctgtatgcc 25
|||||||||||||||||||||
Sbjct: 17 atgcctggctccctgtatgcc 37
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgcctggctccctgtatgcca 26
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
