miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53842_ptc-miRf12020-akr:pmrd
Length = 136
Score = 71.9 bits (36), Expect = 1e-13
Identities = 49/52 (94%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 93 ttcaatccaatagtccctttgatatgggaatcttgatgatgctgcagcggca 144
||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 85 ttcaatccaatag-ccctttgaattgggaatcttgatgatgctgcagcggca 135
Score = 61.9 bits (31), Expect = 1e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 4 atggagcatcatcaagattcacaaactttatctagggctagtg 46
|||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 7 atggagcatcatcaagattcacaagctttat-tagggctagtg 48
>52375_ptc-miRf10553-akr:pmrd
Length = 136
Score = 71.9 bits (36), Expect = 1e-13
Identities = 49/52 (94%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 93 ttcaatccaatagtccctttgatatgggaatcttgatgatgctgcagcggca 144
||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 85 ttcaatccaatag-ccctttgaattgggaatcttgatgatgctgcagcggca 135
Score = 61.9 bits (31), Expect = 1e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 4 atggagcatcatcaagattcacaaactttatctagggctagtg 46
|||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 7 atggagcatcatcaagattcacaagctttat-tagggctagtg 48
>51704_ptc-miR172g:pmrd
Length = 143
Score = 71.9 bits (36), Expect = 1e-13
Identities = 49/52 (94%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 93 ttcaatccaatagtccctttgatatgggaatcttgatgatgctgcagcggca 144
||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 89 ttcaatccaatag-ccctttgaattgggaatcttgatgatgctgcagcggca 139
Score = 61.9 bits (31), Expect = 1e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 4 atggagcatcatcaagattcacaaactttatctagggctagtg 46
|||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 11 atggagcatcatcaagattcacaagctttat-tagggctagtg 52
>54839_vvi-miR172c:pmrd
Length = 138
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 109 ctttgatatgggaatcttgatgatgctgcagcggca 144
||||||| ||||||||||||||||||||||||||||
Sbjct: 98 ctttgatgtgggaatcttgatgatgctgcagcggca 133
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gatggagcatcatcaagattcacaa 27
|||||||||||||||||||||||||
Sbjct: 8 gatggagcatcatcaagattcacaa 32
>51948_ptc-miRf10126-akr:pmrd
Length = 152
Score = 58.0 bits (29), Expect = 2e-09
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 3 gatggagcatcatcaagattcacaaactttatctagggcta 43
||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 14 gatggagcaccatcaagattcacaaactttat-tagggcta 53
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgcagcggca 144
||||||||||||||||||||||||||||
Sbjct: 116 tgggaatcttgatgatgctgcagcggca 143
>51705_ptc-miR172h:pmrd
Length = 143
Score = 58.0 bits (29), Expect = 2e-09
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 3 gatggagcatcatcaagattcacaaactttatctagggcta 43
||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 10 gatggagcaccatcaagattcacaaactttat-tagggcta 49
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgcagcggca 144
||||||||||||||||||||||||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggca 139
>51701_ptc-miR172d:pmrd
Length = 182
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 115 tatgggaatcttgatgatgctgcagcggca 144
|||||||||||||||||||||||| |||||
Sbjct: 149 tatgggaatcttgatgatgctgcatcggca 178
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 gcatcatcaagattcacaaacttta 33
||||||||||||||||||| |||||
Sbjct: 16 gcatcatcaagattcacaagcttta 40
>53739_ptc-miRf11917-akr:pmrd
Length = 143
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 116 atgggaatcttgatgatgctgcagcggca 144
||||||||||||||||||||||| |||||
Sbjct: 105 atgggaatcttgatgatgctgcatcggca 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 catcaagattcacaaacttta 33
|||||||||||||||||||||
Sbjct: 24 catcaagattcacaaacttta 44
>52835_ptc-miRf11013-akr:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 116 atgggaatcttgatgatgctgcagcggca 144
||||||||||||||||||||||| |||||
Sbjct: 35 atgggaatcttgatgatgctgcatcggca 7
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 13 catcaagattcacaaacttta 33
|||||||||||||||||||||
Sbjct: 116 catcaagattcacaaacttta 96
>52315_ptc-miRf10493-akr:pmrd
Length = 141
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 116 atgggaatcttgatgatgctgcagcggca 144
||||||||||||||||||||||| |||||
Sbjct: 104 atgggaatcttgatgatgctgcatcggca 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 catcaagattcacaaacttta 33
|||||||||||||||||||||
Sbjct: 23 catcaagattcacaaacttta 43
>51901_ptc-miRf10079-akr:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 116 atgggaatcttgatgatgctgcagcggca 144
||||||||||||||||||||||| |||||
Sbjct: 33 atgggaatcttgatgatgctgcatcggca 5
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 13 catcaagattcacaaacttta 33
|||||||||||||||||||||
Sbjct: 114 catcaagattcacaaacttta 94
>51702_ptc-miR172e:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 116 atgggaatcttgatgatgctgcagcggca 144
||||||||||||||||||||||| |||||
Sbjct: 101 atgggaatcttgatgatgctgcatcggca 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 catcaagattcacaaacttta 33
|||||||||||||||||||||
Sbjct: 20 catcaagattcacaaacttta 40
>46987_ath-miR172d:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggca 144
|||||||||||||||||||||||||
Sbjct: 89 gaatcttgatgatgctgcagcggca 113
>48151_ath-miRf11051-akr:pmrd
Length = 133
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcacaaa 28
||||||||||||||||||||||||
Sbjct: 17 tggagcatcatcaagattcacaaa 40
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 tatgggaatcttgatgatgctgcagc 140
|||| |||||||||||||||||||||
Sbjct: 94 tatgagaatcttgatgatgctgcagc 119
>47855_ath-miRf10755-akr:pmrd
Length = 133
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 5 tggagcatcatcaagattcacaaa 28
||||||||||||||||||||||||
Sbjct: 117 tggagcatcatcaagattcacaaa 94
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 115 tatgggaatcttgatgatgctgcagc 140
|||| |||||||||||||||||||||
Sbjct: 40 tatgagaatcttgatgatgctgcagc 15
>47545_ath-miRf10445-akr:pmrd
Length = 131
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcacaaa 28
||||||||||||||||||||||||
Sbjct: 16 tggagcatcatcaagattcacaaa 39
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 tatgggaatcttgatgatgctgcagc 140
|||| |||||||||||||||||||||
Sbjct: 93 tatgagaatcttgatgatgctgcagc 118
>46986_ath-miR172c:pmrd
Length = 133
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcacaaa 28
||||||||||||||||||||||||
Sbjct: 17 tggagcatcatcaagattcacaaa 40
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 tatgggaatcttgatgatgctgcagc 140
|||| |||||||||||||||||||||
Sbjct: 94 tatgagaatcttgatgatgctgcagc 119
>46883_aqc-miR172b:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 116 atgggaatcttgatgatgctgca 138
|||||||||||||||||||||||
Sbjct: 83 atgggaatcttgatgatgctgca 105
>46882_aqc-miR172a:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 tgatatgggaatcttgatgatgctgca 138
||||||| |||||||||||||||||||
Sbjct: 91 tgatatgagaatcttgatgatgctgca 117
>55045_zma-miR172f:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 113 tgggaatcttgatgatgctgca 134
>55044_zma-miR172e:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 133 tgggaatcttgatgatgctgca 154
>54840_vvi-miR172d:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctgatggagcatcatcaagattcaca 26
|||||| |||||||||||||||||||
Sbjct: 6 ctgatgcagcatcatcaagattcaca 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 110 tttgatatgggaatcttgatgatgctgca 138
||||| ||| |||||||||||||||||||
Sbjct: 70 tttgagatgagaatcttgatgatgctgca 98
>54464_sbi-miR172b:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 148 tgggaatcttgatgatgctgca 169
>52845_ptc-miRf11023-akr:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcaca 26
||||||||||||||||||||||
Sbjct: 8 tggagcatcatcaagattcaca 29
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 108 gaatcttgatgatgctgcatcggca 132
>51903_ptc-miRf10081-akr:pmrd
Length = 147
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcaca 26
||||||||||||||||||||||
Sbjct: 15 tggagcatcatcaagattcaca 36
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 115 gaatcttgatgatgctgcatcggca 139
>51699_ptc-miR172b:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcaca 26
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 112 gaatcttgatgatgctgcatcggca 136
>51344_ppd-miR172b:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 tggagcatcatcaagattcaca 26
||||||||||||||||||||||
Sbjct: 128 tggagcatcatcaagattcaca 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 28 gaatcttgatgatgctgcatcggca 4
>51343_ppd-miR172a:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcaca 26
||||||||||||||||||||||
Sbjct: 10 tggagcatcatcaagattcaca 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 110 gaatcttgatgatgctgcatcggca 134
>48907_osa-miR172b:pmrd
Length = 238
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgca 227
>48693_mes-miR172:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 115 tatgggaatcttgatgatgctgcagcggca 144
|||| ||||||||||||||||||| |||||
Sbjct: 112 tatgagaatcttgatgatgctgcatcggca 141
>47734_ath-miRf10634-akr:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 40 tgggaatcttgatgatgctgca 19
>46988_ath-miR172e:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 93 tgggaatcttgatgatgctgca 114
>54838_vvi-miR172b:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 28 gaatcttgatgatgctgcatcggca 4
>54837_vvi-miR172a:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 28 gaatcttgatgatgctgcatcggca 4
>51703_ptc-miR172f:pmrd
Length = 161
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 133 gaatcttgatgatgctgcatcggca 157
>48571_gma-miR172b:pmrd
Length = 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 110 tttgatatgggaatcttgatgatgctgca 138
|||||| || |||||||||||||||||||
Sbjct: 105 tttgatgtgagaatcttgatgatgctgca 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 gatggagcatcatcaagattcaca 26
|||| |||||||||||||||||||
Sbjct: 20 gatgtagcatcatcaagattcaca 43
>48410_bra-miR172b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 atatgggaatcttgatgatgctgca 138
||||| |||||||||||||||||||
Sbjct: 77 atatgagaatcttgatgatgctgca 101
>48409_bra-miR172b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 atatgggaatcttgatgatgctgca 138
||||| |||||||||||||||||||
Sbjct: 77 atatgagaatcttgatgatgctgca 101
>48408_bra-miR172a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 atatgggaatcttgatgatgctgca 138
||||| |||||||||||||||||||
Sbjct: 82 atatgagaatcttgatgatgctgca 106
>48388_bol-miR172b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 atatgggaatcttgatgatgctgca 138
||||| |||||||||||||||||||
Sbjct: 77 atatgagaatcttgatgatgctgca 101
>48387_bol-miR172a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 atatgggaatcttgatgatgctgca 138
||||| |||||||||||||||||||
Sbjct: 82 atatgagaatcttgatgatgctgca 106
>48133_ath-miRf11033-akr:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 88 gaatcttgatgatgctgcatcggca 112
>47664_ath-miRf10564-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 atatgggaatcttgatgatgctgca 138
||||| |||||||||||||||||||
Sbjct: 70 atatgagaatcttgatgatgctgca 94
>47531_ath-miRf10431-akr:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggca 144
||||||||||||||||||| |||||
Sbjct: 92 gaatcttgatgatgctgcatcggca 116
>46985_ath-miR172b:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 atatgggaatcttgatgatgctgca 138
||||| |||||||||||||||||||
Sbjct: 66 atatgagaatcttgatgatgctgca 90
>46984_ath-miR172b:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 atatgggaatcttgatgatgctgca 138
||||| |||||||||||||||||||
Sbjct: 66 atatgagaatcttgatgatgctgca 90
>48570_gma-miR172a:pmrd
Length = 159
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 gatggagcatcatcaagattcaca 26
|||| |||||||||||||||||||
Sbjct: 20 gatgtagcatcatcaagattcaca 43
>46983_ath-miR172a:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggc 143
||||||||||||||||||| ||||
Sbjct: 79 gaatcttgatgatgctgcatcggc 102
