miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54843_vvi-miR319b:pmrd
Length = 194
Score = 107 bits (54), Expect = 3e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 105 tttttgatccaacgaagctggagctgtgttcagttatggctgtcatgtcttggactgaag 164
||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 114 tttttgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaag 173
Query: 165 ggagctccct 174
||||||||||
Sbjct: 174 ggagctccct 183
>48687_ltu-miR319:pmrd
Length = 167
Score = 69.9 bits (35), Expect = 6e-13
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 99 gatgtctttttgatccaacgaagctggagctgtgttcagttatggctgtcatgtcttgga 158
||||| ||||||||||||||| || ||||| ||||| ||| || ||||| ||||||||
Sbjct: 93 gatgtgtttttgatccaacgatgcgggagccgtgtttggttctgtctgtctcgtcttgga 152
Query: 159 ctgaagggagctccc 173
|||||||||||||||
Sbjct: 153 ctgaagggagctccc 167
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 aggagctctcttcagtccagtccaag 30
||||||||||||||||||||||||||
Sbjct: 1 aggagctctcttcagtccagtccaag 26
>48694_mma-miR159:pmrd
Length = 192
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctcc 176
|||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctcc 183
>54846_vvi-miR319f:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccct 182
>54844_vvi-miR319c:pmrd
Length = 182
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctccct 171
>54754_tar-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>54670_svi-miR159:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>54583_smo-miR319:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccct 206
>54391_rin-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>51710_ptc-miR319d:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctccct 185
>51709_ptc-miR319c:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctccct 188
>51707_ptc-miR319a:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>51390_ppt-miR319e:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctccc 173
||||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctccc 167
>51389_ppt-miR319d:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctccc 173
||||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctccc 165
>51388_ppt-miR319d:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctccc 173
||||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctccc 165
>51387_ppt-miR319d:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctccc 173
||||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctccc 165
>51386_ppt-miR319c:pmrd
Length = 189
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctccc 173
||||||||||||||||||||||
Sbjct: 153 tcttggactgaagggagctccc 174
>48788_nof-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctccct 190
>48572_gma-miR319a:pmrd
Length = 207
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccct 189
>48479_fal-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>48476_dso-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>48422_cor-miR159:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccctc 183
>48421_cmi-miR159:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccctc 183
>48415_bvl-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 37 ttggactgaagggagctccctc 16
>46993_ath-miR319b:pmrd
Length = 172
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccct 172
>46992_ath-miR319a:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccctc 175
>46884_aqc-miR319:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccct 175
>46860_ape-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>46856_ahi-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>46855_aha-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>46846_acb-miR159:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 160 ttggactgaagggagctccctc 181
>54686_tae-miR319a:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccc 173
|||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctccc 196
>51708_ptc-miR319b:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccct 174
|||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccct 177
>51385_ppt-miR319b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctcc 172
|||||||||||||||||||||
Sbjct: 139 tcttggactgaagggagctcc 159
>51384_ppt-miR319a:pmrd
Length = 169
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctcc 172
|||||||||||||||||||||
Sbjct: 147 tcttggactgaagggagctcc 167
>48478_ech-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccct 174
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48429_crb-miR159:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccct 174
|||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccct 183
>55052_zma-miR319d:pmrd
Length = 212
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccctcc 176
|||||||||||||| |||||||||
Sbjct: 173 cttggactgaagggtgctccctcc 196
>55050_zma-miR319b:pmrd
Length = 213
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccctcc 176
|||||||||||||| |||||||||
Sbjct: 174 cttggactgaagggtgctccctcc 197
>54847_vvi-miR319g:pmrd
Length = 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccc 173
||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccc 211
>54468_sbi-miR319:pmrd
Length = 249
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccctcc 176
|||||||||||||| |||||||||
Sbjct: 190 cttggactgaagggtgctccctcc 213
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>48915_osa-miR319b:pmrd
Length = 197
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccctcc 176
|||||||||||||| |||||||||
Sbjct: 167 cttggactgaagggtgctccctcc 190
