miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 79.8 bits (40), Expect = 7e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 9 gctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcatgcatt 68
|||||||| ||||||||| |||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 15 gctccttttagtccaatacggagggctgagaagcggcta-gagctgccatctcatgcatt 73
Query: 69 aaggcaat 76
|||||||
Sbjct: 74 taggcaat 81
>51714_ptc-miR319h:pmrd
Length = 195
Score = 79.8 bits (40), Expect = 7e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 9 gctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcatgcatt 68
|||||||| ||||||||| |||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 17 gctccttttagtccaataaggagggctgagaagcggcta-gagctgccatctcatgcatt 75
Query: 69 aaggcaat 76
|||||||
Sbjct: 76 taggcaat 83
>51711_ptc-miR319e:pmrd
Length = 192
Score = 79.8 bits (40), Expect = 7e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 9 gctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcatgcatt 68
|||||||| ||||||||| |||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 15 gctccttttagtccaatacggagggctgagaagcggcta-gagctgccatctcatgcatt 73
Query: 69 aaggcaat 76
|||||||
Sbjct: 74 taggcaat 81
>54380_pvu-miR319c:pmrd
Length = 734
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttctttc 187
||||||||||||||||||||||||||
Sbjct: 410 ttggactgaagggagctccttctttc 435
>46994_ath-miR319c:pmrd
Length = 199
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttcttt 186
|||||||||||||||||||||||||
Sbjct: 170 ttggactgaagggagctccttcttt 194
>54847_vvi-miR319g:pmrd
Length = 222
Score = 48.1 bits (24), Expect = 2e-06
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 7 gagctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcatgca 66
|||||||||| ||||||||| ||||||| || ||||| | ||||||||||||||||||
Sbjct: 12 gagctccttttagtccaataaagagggctgaggggcggcca-gagctgccatctcatgca 70
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 154 cccacccattggactgaagggagctcc 180
||||| |||||||||||||||||||||
Sbjct: 184 cccactcattggactgaagggagctcc 210
>51713_ptc-miR319g:pmrd
Length = 204
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttc 183
||||||||||||||||||||||
Sbjct: 176 ttggactgaagggagctccttc 197
>51712_ptc-miR319f:pmrd
Length = 202
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttc 183
||||||||||||||||||||||
Sbjct: 174 ttggactgaagggagctccttc 195
>51351_ppl-miR319:pmrd
Length = 204
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttc 183
||||||||||||||||||||||
Sbjct: 174 ttggactgaagggagctccttc 195
>51708_ptc-miR319b:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 cattggactgaagggagctcc 180
|||||||||||||||||||||
Sbjct: 155 cattggactgaagggagctcc 175
>48574_gma-miR319c:pmrd
Length = 221
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttcttt 186
|||||||||| ||||||||||||||
Sbjct: 183 ttggactgaaaggagctccttcttt 207
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 4 aaggagctcctttcagtccaa 24
|||||||||||||||||||||
Sbjct: 203 aaggagctcctttcagtccaa 183
>54845_vvi-miR319e:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctcct 181
||||||||||||||||||||
Sbjct: 77 ttggactgaagggagctcct 96
>54754_tar-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>54670_svi-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>54391_rin-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>51385_ppt-miR319b:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctcct 181
||||||||||||||||||||
Sbjct: 141 ttggactgaagggagctcct 160
>48788_nof-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48694_mma-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48479_fal-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48478_ech-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48476_dso-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48429_crb-miR159:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 162 attggactgaagggagctcc 181
>48422_cor-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 161 attggactgaagggagctcc 180
>48421_cmi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 161 attggactgaagggagctcc 180
>48415_bvl-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 38 attggactgaagggagctcc 19
>46992_ath-miR319a:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 153 attggactgaagggagctcc 172
>46860_ape-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>46856_ahi-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>46855_aha-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>46846_acb-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 attggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 159 attggactgaagggagctcc 178
