miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54848_vvi-miR390:pmrd
Length = 140
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 gtggcgctatccatcctgagtttcac 104
||||||||||| ||||||||||||||
Sbjct: 106 gtggcgctatctatcctgagtttcac 131
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 9 ctgttaagctcaggagggatagcgcc 34
>51719_ptc-miR390d:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 agtggcgctatccatcctgagttt 101
||||||||||||||||||||||||
Sbjct: 75 agtggcgctatccatcctgagttt 98
>51718_ptc-miR390c:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 70 tagtctttagtggcgctatccatcctgagtt 100
||||| |||||||||||||| ||||||||||
Sbjct: 84 tagtcattagtggcgctatctatcctgagtt 114
>51717_ptc-miR390b:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 agtggcgctatccatcctgagtttca 103
||||||||||||||||||||||||||
Sbjct: 75 agtggcgctatccatcctgagtttca 100
>51716_ptc-miR390a:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
>48500_ghr-miR390c:pmrd
Length = 114
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 gcgctatccatcctgagtttca 103
||||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtttca 108
>48499_ghr-miR390b:pmrd
Length = 132
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 13 ctgttaagctcaggagggatagcgcc 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 gcgctatccatcctgagtttca 103
||||||||||||||||||||||
Sbjct: 94 gcgctatccatcctgagtttca 115
>48498_ghr-miR390a:pmrd
Length = 124
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 gcgctatccatcctgagtttca 103
||||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttca 112
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||
Sbjct: 1 gttaagctcaggagggatagcgcc 24
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 agtggcgctatccatcctgagttt 101
||||||||||||||||||||||||
Sbjct: 68 agtggcgctatccatcctgagttt 91
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccgtgaagatca 36
|||| ||||||||||||||||||||| ||| |||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccatgatgatca 48
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 tggcgctatccatcctgagtttca 103
||||||||||||||||||||||||
Sbjct: 67 tggcgctatccatcctgagtttca 90
>46995_ath-miR390a:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccgtgaagatca 36
|||| ||||||||||||||||||||| ||| |||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccatgatgatca 48
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 tggcgctatccatcctgagtttca 103
||||||||||||||||||||||||
Sbjct: 67 tggcgctatccatcctgagtttca 90
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccgtgaagatca 36
||||||||||||||||||||| ||| |||||
Sbjct: 1 aagctcaggagggatagcgccatgatgatca 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 tggcgctatccatcctgagttt 101
||||||||||||||||||||||
Sbjct: 50 tggcgctatccatcctgagttt 71
>48575_gma-miR390b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccgtga 30
|||| |||||||||||||||||| ||||||
Sbjct: 6 ctgtaaagctcaggagggatagcaccgtga 35
>48372_bna-miR390c:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
|||| |||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgcc 43
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tggcgctatccatcctgagtt 100
|||||||||||||||||||||
Sbjct: 83 tggcgctatccatcctgagtt 103
>48371_bna-miR390b:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
|||| |||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgcc 38
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 tggcgctatccatcctgagtttca 103
||||||| ||||||||||||||||
Sbjct: 65 tggcgctgtccatcctgagtttca 88
>48370_bna-miR390a:pmrd
Length = 144
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
|||| |||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgcc 53
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tggcgctatccatcctgagtt 100
|||||||||||||||||||||
Sbjct: 93 tggcgctatccatcctgagtt 113
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>51391_ppt-miR390a:pmrd
Length = 137
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgcc 36
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>48729_mtr-miR390:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 gcgctatccatcctgagttt 101
||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagttt 90
>46996_ath-miR390b:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tggcgctatccatcctgagtt 100
|||||||||||||||||||||
Sbjct: 85 tggcgctatccatcctgagtt 105
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 agctcaggagggatagcgcc 26
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 agctcaggagggatagcgcc 26
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
