miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48500_ghr-miR390c:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatggatg 33
|||||||||||||||||||||||||||||
Sbjct: 10 taagctcaggagggatagcgccatggatg 38
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 tatagcgctatccatcctgagtttcat 118
|||||||||||||||||||||||||||
Sbjct: 83 tatagcgctatccatcctgagtttcat 109
>48499_ghr-miR390b:pmrd
Length = 132
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatggatg 33
|||||||||||||||||||||||||||||
Sbjct: 17 taagctcaggagggatagcgccatggatg 45
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 tatagcgctatccatcctgagtttcat 118
|||||||||||||||||||||||||||
Sbjct: 90 tatagcgctatccatcctgagtttcat 116
>48498_ghr-miR390a:pmrd
Length = 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatggatg 33
|||||||||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgccatggatg 42
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 tatagcgctatccatcctgagtttcat 118
|||||||||||||||||||||||||||
Sbjct: 87 tatagcgctatccatcctgagtttcat 113
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagtttcattgg 121
||||||||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttcattgg 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatg 29
||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41
>46995_ath-miR390a:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagtttcattgg 121
||||||||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttcattgg 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatg 29
||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41
>54848_vvi-miR390:pmrd
Length = 140
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatg 29
|||||||||||||||||||||||||
Sbjct: 10 taagctcaggagggatagcgccatg 34
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatg 29
|||||||||||||||||||||||||
Sbjct: 13 taagctcaggagggatagcgccatg 37
>51718_ptc-miR390c:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatg 29
|||||||||||||||||||||||||
Sbjct: 10 taagctcaggagggatagcgccatg 34
>51717_ptc-miR390b:pmrd
Length = 106
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagtttcattg 120
|||||||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttcattg 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgcc 26
||||||||||||||||||||||
Sbjct: 10 taagctcaggagggatagcgcc 31
>51716_ptc-miR390a:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatg 29
|||||||||||||||||||||||||
Sbjct: 10 taagctcaggagggatagcgccatg 34
>46996_ath-miR390b:pmrd
Length = 120
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatgg 30
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
>48372_bna-miR390c:pmrd
Length = 128
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatg 29
||||||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgccatg 46
>48370_bna-miR390a:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatg 29
||||||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgccatg 56
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatg 29
||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatg 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagttt 115
||||||||||||||||||||
Sbjct: 52 gcgctatccatcctgagttt 71
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 87 tcttctatagcgctatccatcctgagttt 115
|||||| | ||||||||||||||||||||
Sbjct: 62 tcttctcttgcgctatccatcctgagttt 90
>48371_bna-miR390b:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccat 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagtttcattgg 121
||||| ||||||||||||||||||||
Sbjct: 67 gcgctgtccatcctgagtttcattgg 92
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgcc 26
||||||||||||||||||||||
Sbjct: 3 taagctcaggagggatagcgcc 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagttt 115
||||||||||||||||||||
Sbjct: 72 gcgctatccatcctgagttt 91
>51719_ptc-miR390d:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgcc 26
||||||||||||||||||||||
Sbjct: 10 taagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagttt 115
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 agctcaggagggatagcgcc 26
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 agctcaggagggatagcgcc 26
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33