miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 101 tcaagaaagctgtgggagaacatg 124
||||||||||||||||||||||||
Sbjct: 24 tcaagaaagctgtgggagaacatg 1
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 101 tcaagaaagctgtgggagaacatg 124
||||||||||||||||||||||||
Sbjct: 24 tcaagaaagctgtgggagaacatg 1
>51738_ptc-miR396e:pmrd
Length = 145
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 tcaagaaagctgtgggagaacatg 124
||||||||||||||||||||||||
Sbjct: 121 tcaagaaagctgtgggagaacatg 144
>54869_vvi-miR396b:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 aagttcaagaaagctgtggga 117
|||||||||||||||||||||
Sbjct: 77 aagttcaagaaagctgtggga 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 agaataagttcaagaaagctgtgg 115
|||| |||||||||||||||||||
Sbjct: 39 agaagaagttcaagaaagctgtgg 16
>54584_smo-miR396:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 aagttcaagaaagctgtggga 117
|||||||||||||||||||||
Sbjct: 135 aagttcaagaaagctgtggga 155
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 agaataagttcaagaaagctgtgg 115
|||| |||||||||||||||||||
Sbjct: 28 agaagaagttcaagaaagctgtgg 5
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 agaataagttcaagaaagctgtgg 115
|||| |||||||||||||||||||
Sbjct: 28 agaagaagttcaagaaagctgtgg 5
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 101 tcaagaaagctgtgggagaacatg 124
|||||||||||||||||| |||||
Sbjct: 89 tcaagaaagctgtgggaggacatg 112
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 97 aagttcaagaaagctgtgggagaacatg 124
||||||||||||||||||| | ||||||
Sbjct: 73 aagttcaagaaagctgtggaaaaacatg 100
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 101 tcaagaaagctgtgggagaacatg 124
|||||||||| |||||||||||||
Sbjct: 130 tcaagaaagccgtgggagaacatg 153
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 97 aagttcaagaaagctgtgggagaacatg 124
||||||||||||||||||| | ||||||
Sbjct: 31 aagttcaagaaagctgtggaaaaacatg 4
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 101 tcaagaaagctgtgggagaa 120
||||||||||||||||||||
Sbjct: 72 tcaagaaagctgtgggagaa 91
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 101 tcaagaaagctgtgggagaa 120
||||||||||||||||||||
Sbjct: 91 tcaagaaagctgtgggagaa 110
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 101 tcaagaaagctgtgggagaacatg 124
||||||||||||||||| ||||||
Sbjct: 109 tcaagaaagctgtgggaaaacatg 132
