miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51741_ptc-miR397a:pmrd
Length = 120
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 126 atttcaccagcgctgcattcaatcatgttttt 157
||||||||||||||||||||||||||||||||
Sbjct: 88 atttcaccagcgctgcattcaatcatgttttt 119
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatgaa 28
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>54873_vvi-miR397b:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aaacatcattgagtgcagcgttgatgaa 28
||||||||||||||||||||||||||||
Sbjct: 6 aaacatcattgagtgcagcgttgatgaa 33
>54872_vvi-miR397a:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aaacatcattgagtgcagcgttgatgaa 28
||||||||||||||||||||||||||||
Sbjct: 6 aaacatcattgagtgcagcgttgatgaa 33
>51742_ptc-miR397b:pmrd
Length = 114
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 126 atttcaccagcgctgcattcaatcatgttttt 157
|||||||||||||||||||||| |||||||||
Sbjct: 82 atttcaccagcgctgcattcaaccatgttttt 113
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 cattgagtgcagcgttgatgaa 28
||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaa 33
>48959_osa-miR397a:pmrd
Length = 114
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatgaa 28
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>48958_osa-miR397a:pmrd
Length = 114
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatgaa 28
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>48376_bna-miR397b:pmrd
Length = 96
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 2 aacatcattgagtgcagcgttgatg 26
>48375_bna-miR397a:pmrd
Length = 96
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 2 aacatcattgagtgcagcgttgatg 26
>48334_bdi-miR2508:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatgaa 28
|||||||||||||||||||||||||
Sbjct: 8 catcattgagtgcagcgttgatgaa 32
>48315_bdi-miR397:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatgaa 28
|||||||||||||||||||||||||
Sbjct: 16 catcattgagtgcagcgttgatgaa 40
>47010_ath-miR397a:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>54560_sly-miR397:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 aaacatcattgagtgcagcgttgatga 27
|||||| ||||||||||||||||||||
Sbjct: 13 aaacatgattgagtgcagcgttgatga 39
>54748_tae-miR2029:pmrd
Length = 71
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 attgagtgcagcgttgatgaa 28
|||||||||||||||||||||
Sbjct: 1 attgagtgcagcgttgatgaa 21
>48961_osa-miR397b:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 attgagtgcagcgttgatgaa 28
|||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatgaa 33
>48960_osa-miR397b:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 attgagtgcagcgttgatgaa 28
|||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatgaa 33
>47011_ath-miR397b:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||| ||||||||
Sbjct: 7 aacatcattgagtgcatcgttgatg 31
