miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51745_ptc-miR398b:pmrd
Length = 85
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 97 ttcatgtgttctcaggtcgcccctgccggg 126
||||||||||||||||||||||||||||||
Sbjct: 52 ttcatgtgttctcaggtcgcccctgccggg 81
>48963_osa-miR398b:pmrd
Length = 88
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 94 tctttcatgtgttctcaggtcgcccctgccggg 126
|||||| ||||||||||||||||||||||||||
Sbjct: 51 tctttcgtgtgttctcaggtcgcccctgccggg 83
>51746_ptc-miR398c:pmrd
Length = 97
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 99 catgtgttctcaggtcgcccctgccggg 126
||||||||||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccctgccggg 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 1 ctacaggagcgacctgagaatcacatgtgg 30
||||||||||||||||| ||||||||||||
Sbjct: 8 ctacaggagcgacctga-aatcacatgtgg 36
>46890_aqc-miR398b:pmrd
Length = 93
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 93 ttctttcatgtgttctcaggtcgcccctgc 122
||||| ||||||||||||||||||||||||
Sbjct: 64 ttcttccatgtgttctcaggtcgcccctgc 93
>54876_vvi-miR398c:pmrd
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tcatgtgttctcaggtcgcccctgc 122
|||||||||||||||||||||||||
Sbjct: 55 tcatgtgttctcaggtcgcccctgc 79
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ctacaggagcgacctgagaatcacatg 27
||||||||| |||||||||||||||||
Sbjct: 6 ctacaggagtgacctgagaatcacatg 32
>54875_vvi-miR398b:pmrd
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tcatgtgttctcaggtcgcccctgc 122
|||||||||||||||||||||||||
Sbjct: 55 tcatgtgttctcaggtcgcccctgc 79
>48749_mtr-miR398a:pmrd
Length = 77
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tcatgtgttctcaggtcgcccctg 121
||||||||||||||||||||||||
Sbjct: 54 tcatgtgttctcaggtcgcccctg 77
>47014_ath-miR398c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 96 tttcatgtgttctcaggtcgcccctgc 122
||||||||||||||||||| |||||||
Sbjct: 80 tttcatgtgttctcaggtcacccctgc 106
>47013_ath-miR398b:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 96 tttcatgtgttctcaggtcgcccctgc 122
||||||||||||||||||| |||||||
Sbjct: 81 tttcatgtgttctcaggtcacccctgc 107
>55090_zma-miR398c:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 tctttcatgtgttctcaggtcgcccc 119
|||| |||||||||||||||||||||
Sbjct: 81 tcttgcatgtgttctcaggtcgcccc 106
>54744_tae-miR2025:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 tcatgtgttctcaggtcgcccc 119
||||||||||||||||||||||
Sbjct: 68 tcatgtgttctcaggtcgcccc 89
>55089_zma-miR398b:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 catgtgttctcaggtcgcccc 119
|||||||||||||||||||||
Sbjct: 119 catgtgttctcaggtcgcccc 139
>55088_zma-miR398a:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 99 catgtgttctcaggtcgcccc 119
|||||||||||||||||||||
Sbjct: 24 catgtgttctcaggtcgcccc 4
