miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54881_vvi-miR399e:pmrd
Length = 112
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaat 105
||||||||||||||||||||||||||
Sbjct: 81 ctgccaaaggagatttgcccggcaat 106
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 81 tgccaaaggagatttgcccggcaat 105
|||||||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 81 tgccaaaggagatttgcccggcaat 105
|||||||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>51749_ptc-miR399c:pmrd
Length = 126
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 81 tgccaaaggagatttgcccggcaat 105
|||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaat 121
>51748_ptc-miR399b:pmrd
Length = 126
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 81 tgccaaaggagatttgcccggcaat 105
|||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaat 121
>54494_sbi-miR399f:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaat 105
|||||||||||||||||||| |||||
Sbjct: 80 ctgccaaaggagatttgcccagcaat 105
>54493_sbi-miR399e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaat 105
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>51747_ptc-miR399a:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaat 105
|||||||||||||||||||| |||||
Sbjct: 90 ctgccaaaggagatttgccccgcaat 115
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaat 105
|||||||||||||||||||| |||||
Sbjct: 84 ctgccaaaggagatttgcccagcaat 109
>48969_osa-miR399f:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaat 105
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>48968_osa-miR399e:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaat 105
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>48377_bna-miR399:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccgg 101
||||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgcccgg 101
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaat 105
|||||||||||||||||||| |||||
Sbjct: 65 ctgccaaaggagatttgccccgcaat 90
>47020_ath-miR399f:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccgg 101
||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccgg 108
>47018_ath-miR399d:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaat 105
|||||||||||||||||||| |||||
Sbjct: 69 ctgccaaaggagatttgccccgcaat 94
>51756_ptc-miR399j:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccggcaa 104
||||||||||||||||| |||||||
Sbjct: 81 ctgccaaaggagatttgtccggcaa 105
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgccc 99
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>48970_osa-miR399g:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgccc 99
||||||||||||||||||||
Sbjct: 88 ctgccaaaggagatttgccc 107
>48754_mtr-miR399e:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgccc 99
||||||||||||||||||||
Sbjct: 94 ctgccaaaggagatttgccc 113
>48750_mtr-miR399a:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgccc 99
||||||||||||||||||||
Sbjct: 94 ctgccaaaggagatttgccc 113
>47015_ath-miR399a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgccc 99
||||||||||||||||||||
Sbjct: 92 ctgccaaaggagatttgccc 111
