miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47015_ath-miR399a:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttatctgccaaaggagatttgc 78
||||||||||||||||||||||
Sbjct: 88 ttatctgccaaaggagatttgc 109
>54880_vvi-miR399d:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tctgccaaaggagatttgctc 80
|||||||||||||||||||||
Sbjct: 73 tctgccaaaggagatttgctc 93
>53709_ptc-miRf11887-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 62 tgccaaaggagatttgctcac 82
|||||||||||||||||||||
Sbjct: 68 tgccaaaggagatttgctcac 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 58 tatctgccaaaggagatttgctca 81
|||||||||||||| |||||||||
Sbjct: 36 tatctgccaaaggaaatttgctca 13
>51757_ptc-miR399k:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 62 tgccaaaggagatttgctcac 82
|||||||||||||||||||||
Sbjct: 66 tgccaaaggagatttgctcac 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 58 tatctgccaaaggagatttgctca 81
|||||||||||||| |||||||||
Sbjct: 34 tatctgccaaaggaaatttgctca 11
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tatctgccaaaggagatttgc 78
|||||||||||||||||||||
Sbjct: 85 tatctgccaaaggagatttgc 105
>48754_mtr-miR399e:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 atctgccaaaggagatttgc 78
||||||||||||||||||||
Sbjct: 92 atctgccaaaggagatttgc 111
>48750_mtr-miR399a:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 atctgccaaaggagatttgc 78
||||||||||||||||||||
Sbjct: 92 atctgccaaaggagatttgc 111
>54881_vvi-miR399e:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctgccaaaggagatttgc 78
|||||||||||||||||||
Sbjct: 80 tctgccaaaggagatttgc 98
>54494_sbi-miR399f:pmrd
Length = 120
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctgccaaaggagatttgc 78
|||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgc 97
>48969_osa-miR399f:pmrd
Length = 117
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctgccaaaggagatttgc 78
|||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgc 103
>48377_bna-miR399:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctgccaaaggagatttgc 78
|||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgc 97
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctgccaaaggagatttgc 78
|||||||||||||||||||
Sbjct: 64 tctgccaaaggagatttgc 82
>47020_ath-miR399f:pmrd
Length = 118
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctgccaaaggagatttgc 78
|||||||||||||||||||
Sbjct: 86 tctgccaaaggagatttgc 104
>47019_ath-miR399e:pmrd
Length = 109
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctgccaaaggagatttgc 78
|||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgc 95
>47018_ath-miR399d:pmrd
Length = 100
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctgccaaaggagatttgc 78
|||||||||||||||||||
Sbjct: 68 tctgccaaaggagatttgc 86
>46891_aqc-miR399:pmrd
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 attatctgccaaaggagatttgc 78
|||||||||||||||||| ||||
Sbjct: 66 attatctgccaaaggagagttgc 88
