miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54389_rco-miR408:pmrd
Length = 129
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 aaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 aaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggct 83
Query: 61 ctacccctgcactgcctcttccctggcttccg 92
||||||||||||||||||||||||||||||||
Sbjct: 84 ctacccctgcactgcctcttccctggcttccg 115
>51762_ptc-miR408:pmrd
Length = 105
Score = 95.6 bits (48), Expect = 5e-21
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 2 aagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctc 61
||||| |||||||||||| |||||||||| ||||||||||||| | |||||||||||
Sbjct: 12 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 70
Query: 62 tacccctgcactgcctcttccctggctt 89
||||| ||||||||||||||||||||||
Sbjct: 71 tacccatgcactgcctcttccctggctt 98
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 83.8 bits (42), Expect = 2e-17
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 8 gggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctctacccc 67
|||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 3 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 61
Query: 68 tgcactgcctcttccctg 85
||||||||||||||||||
Sbjct: 62 tgcactgcctcttccctg 79
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 49 tctgttttggctctacccctgcactgcctcttccctggct 88
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 44 tctgttttgtctctacccatgcactgcctcttccctggct 5
>47031_ath-miR408:pmrd
Length = 218
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 49 tctgttttggctctacccctgcactgcctcttccctggct 88
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 102 tctgttttgtctctacccatgcactgcctcttccctggct 141
>54892_vvi-miR408:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 7e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 50 ctgttttggctctacccctgcactgcctcttccctggct 88
||||||| ||||||||| |||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggct 98
>51347_ppe-miR408:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 4e-09
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 2 aagactgggaacaggcagtgcatggatggggctactaacagaaaac---atctgttttgg 58
||||| ||||||||| || |||||||||| | | | ||||||||| | ||||| |||
Sbjct: 7 aagacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtgg 66
Query: 59 ctctacccctgcactgcctcttccctggct 88
|||||| | |||||||||||||||||||||
Sbjct: 67 ctctactcatgcactgcctcttccctggct 96
>48428_cpt-miR408:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 4e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 49 tctgttttggctctacccctgcactgcctcttccctggct 88
||||||||||||| ||| |||||||||||||||||||||
Sbjct: 52 tctgttttggctcctcccatgcactgcctcttccctggct 91
>54649_sof-miR408d:pmrd
Length = 215
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 acccctgcactgcctcttccctggct 88
||||||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggct 197
>55104_zma-miR408:pmrd
Length = 191
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 cccctgcactgcctcttccctggct 88
|||||||||||||||||||||||||
Sbjct: 149 cccctgcactgcctcttccctggct 173
>54648_sof-miR408c:pmrd
Length = 286
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 cccctgcactgcctcttccctggct 88
|||||||||||||||||||||||||
Sbjct: 244 cccctgcactgcctcttccctggct 268
>54647_sof-miR408b:pmrd
Length = 286
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 cccctgcactgcctcttccctggct 88
|||||||||||||||||||||||||
Sbjct: 244 cccctgcactgcctcttccctggct 268
>54646_sof-miR408a:pmrd
Length = 283
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 cccctgcactgcctcttccctggct 88
|||||||||||||||||||||||||
Sbjct: 241 cccctgcactgcctcttccctggct 265
>54499_sbi-miR408:pmrd
Length = 205
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 cccctgcactgcctcttccctggct 88
|||||||||||||||||||||||||
Sbjct: 181 cccctgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 cccctgcactgcctcttccctggct 88
|||||||||||||||||||||||||
Sbjct: 150 cccctgcactgcctcttccctggct 174
>54690_tae-miR408:pmrd
Length = 187
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 ccctgcactgcctcttccctggct 88
||||||||||||||||||||||||
Sbjct: 134 ccctgcactgcctcttccctggct 157
>51397_ppt-miR408b:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggcttcc 91
||||||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggcttcc 117
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggct 88
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51566_pta-miR408:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggct 88
|||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggct 85
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 68 tgcactgcctcttccctggct 88
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
>54650_sof-miR408e:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 ccctgcactgcctcttccctggct 88
|||||||||| |||||||||||||
Sbjct: 242 ccctgcactgactcttccctggct 265
