miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48532_gma-miR156e:pmrd
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 aggaggtgttggtgatgctgttgacagaagatagagagcactgatgatgaaatgcatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaggtgttggtgatgctgttgacagaagatagagagcactgatgatgaaatgcatgaa 60
Query: 61 agggaatggcatctcactcctttgtgctctctagtcttctgtcatcatccttctccctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agggaatggcatctcactcctttgtgctctctagtcttctgtcatcatccttctccctcc 120
Query: 121 cctc 124
||||
Sbjct: 121 cctc 124
>48537_gma-miR157c:pmrd
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 21 ttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggcatctcactcc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggcatctcactcc 25
Query: 81 tttgtgctctctagtcttctgtca 104
||||||||||||||||||||||||
Sbjct: 24 tttgtgctctctagtcttctgtca 1
>51598_ptc-miR156h:pmrd
Length = 103
Score = 137 bits (69), Expect = 2e-33
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 11 ggtgatgctgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggc 70
|||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||
Sbjct: 1 ggtgatgctgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgc 60
Query: 71 atctcactcctttgtgctctctagtcttctgtcatca 107
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctcactcctttgtgctctctagtcttctgtcatca 97
>48697_mtr-miR156h:pmrd
Length = 94
Score = 135 bits (68), Expect = 9e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 16 tgctgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggcatctc 75
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct: 1 tgctgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctc 60
Query: 76 actcctttgtgctctctagtcttctgtcatca 107
| ||||||||||||| || |||||||||||||
Sbjct: 61 attcctttgtgctctttattcttctgtcatca 92
>51597_ptc-miR156g:pmrd
Length = 103
Score = 129 bits (65), Expect = 5e-31
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 11 ggtgatgctgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggc 70
||||||| ||||||||||||||||||||||| |||||||||||||||| | ||| ||
Sbjct: 1 ggtgatgttgttgacagaagatagagagcacagatgatgaaatgcatggagcttaattgc 60
Query: 71 atctcactcctttgtgctctctagtcttctgtcatca 107
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctcactcctttgtgctctctagtcttctgtcatca 97
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 117 bits (59), Expect = 2e-27
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 20 gttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggcatctcactc 79
||||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||
Sbjct: 1 gttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcactc 60
Query: 80 ctttgtgctctctagtcttctgtcatc 106
|||||||||||||||||||||||||||
Sbjct: 61 ctttgtgctctctagtcttctgtcatc 87
>54774_vvi-miR156i:pmrd
Length = 103
Score = 87.7 bits (44), Expect = 2e-18
Identities = 78/89 (87%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggcatctcact 78
||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcacagatgatgaaatgca----aggagccagcatctcact 64
Query: 79 cctttgtgctctctagtcttctgtcatca 107
||||||||||||||| |||||||||||||
Sbjct: 65 cctttgtgctctctattcttctgtcatca 93
>54772_vvi-miR156g:pmrd
Length = 103
Score = 87.7 bits (44), Expect = 2e-18
Identities = 84/97 (86%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 11 ggtgatgctgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggc 70
||||||| ||||||||||||||||||||||| |||||||| |||||| | | ||
Sbjct: 1 ggtgatgttgttgacagaagatagagagcacagatgatgatgtgcatggagt----ttgc 56
Query: 71 atctcactcctttgtgctctctagtcttctgtcatca 107
|||||||||||||||||||||||| ||||||||||||
Sbjct: 57 atctcactcctttgtgctctctagacttctgtcatca 93
>51600_ptc-miR156j:pmrd
Length = 100
Score = 73.8 bits (37), Expect = 3e-14
Identities = 84/98 (85%), Gaps = 5/98 (5%)
Strand = Plus / Plus
Query: 11 ggtgatgctgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaat-gg 69
||||||| ||||||||||||||||||||||| |||||||| |||| || ||| | |
Sbjct: 1 ggtgatgttgttgacagaagatagagagcacagatgatgatatgc----aatggactctg 56
Query: 70 catctcactcctttgtgctctctagtcttctgtcatca 107
|||| ||||||||||||||||||| ||||||||||||
Sbjct: 57 catcccactcctttgtgctctctatgcttctgtcatca 94
>46862_aqc-miR156b:pmrd
Length = 83
Score = 73.8 bits (37), Expect = 3e-14
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 22 tgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggcatctcactcct 81
|||||||||||||||||||| |||||||| ||||||| | | | || ||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatgatatgcatgga-gagtctg-catctcactcct 58
Query: 82 ttgtgctctctagtcttctgtcatc 106
|||||||||||| |||||||||||
Sbjct: 59 ttgtgctctctatgcttctgtcatc 83
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 65.9 bits (33), Expect = 7e-12
Identities = 77/90 (85%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaat-ggcatctcac 77
||||||||||||||||||||||| |||||||| |||| || ||| | ||||| |||
Sbjct: 1 tgttgacagaagatagagagcacagatgatgatatgc----aatggactctgcatcccac 56
Query: 78 tcctttgtgctctctagtcttctgtcatca 107
|||||||||||||||| ||||||||||||
Sbjct: 57 tcctttgtgctctctatgcttctgtcatca 86
>48695_mtr-miR156e:pmrd
Length = 172
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatgaaatgcat 57
||||||||||||||||||||||| |||||||| ||||||
Sbjct: 4 tgttgacagaagatagagagcacagatgatgatatgcat 42
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 69 gcatctcactcctttgtgctctctagtcttctgtcatca 107
|||| |||||||||||||||||||| ||||||||||||
Sbjct: 132 gcatatcactcctttgtgctctctatgcttctgtcatca 170
>48531_gma-miR156d:pmrd
Length = 151
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatgaaatgcat 57
||||||||||||||||||||||| |||||||| ||||||
Sbjct: 19 tgttgacagaagatagagagcacagatgatgatatgcat 57
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 69 gcatctcactcctttgtgctctctagtcttctgtcatca 107
|||||| |||||||||||||||||| ||||||||||||
Sbjct: 96 gcatcttactcctttgtgctctctatacttctgtcatca 134
>46925_ath-miR157b:pmrd
Length = 132
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 69 gcatctcactcctttgtgctctctagtcttctgtcatca 107
|||||| ||||||||||||||||||| ||||||||||||
Sbjct: 73 gcatcttactcctttgtgctctctagccttctgtcatca 111
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgat 48
||||||||||||||||||||||| ||||||
Sbjct: 17 tgttgacagaagatagagagcacagatgat 46
>46924_ath-miR157a:pmrd
Length = 98
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 69 gcatctcactcctttgtgctctctagtcttctgtcatca 107
|||||| ||||||||||||||||||| ||||||||||||
Sbjct: 58 gcatcttactcctttgtgctctctagccttctgtcatca 96
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatga 50
||||||||||||||||||||||| ||||||||
Sbjct: 2 tgttgacagaagatagagagcacagatgatga 33
>51599_ptc-miR156i:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 12 gtgatgctgttgacagaagatagagagcactgatgatg 49
|||||| ||||||||||||||||||||||| |||||||
Sbjct: 2 gtgatgttgttgacagaagatagagagcacagatgatg 39
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 71 atctcactcctttgtgctctctagtcttctgtcatca 107
||||||||||||||||||||||| |||||| |||||
Sbjct: 58 atctcactcctttgtgctctctatgcttctgccatca 94
>48631_gra-miR157b:pmrd
Length = 91
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 69 gcatctcactcctttgtgctctctagtcttctgtcatcatc 109
||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 51 gcatcccactcctttgtgctctctatgcttctgtcatcatc 91
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatg 49
||||||||||||||||||||||| |||||||
Sbjct: 3 tgttgacagaagatagagagcacagatgatg 33
>54661_stu-miR157a:pmrd
Length = 91
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagcactgatgatgaaatgc 55
|||||||||||||||||||||| ||||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>54532_sly-miR156a:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagcactgatgatgaaatgc 55
|||||||||||||||||||||| ||||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>48630_gra-miR157a:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatg 49
||||||||||||||||||||||| |||||||
Sbjct: 3 tgttgacagaagatagagagcacagatgatg 33
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 69 gcatctcactcctttgtgctctctagtcttctgtcatca 107
||||| |||||||||||||||| || ||||||||||||
Sbjct: 61 gcatcccactcctttgtgctctttatgcttctgtcatca 99
>48790_nta-miR157:pmrd
Length = 131
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagcactgatgatga 50
||||||||||||||||||||| ||||||||
Sbjct: 1 ttgacagaagatagagagcacagatgatga 30
>48393_bra-miR157a:pmrd
Length = 149
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatgaaatgca 56
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 12 tgttgacagaagatagagagcactaaggatgacatgca 49
>48384_bol-miR157a:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatgaaatgca 56
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 4 tgttgacagaagatagagagcactaaggatgacatgca 41
>48338_bna-miR156c:pmrd
Length = 155
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatgaaatgca 56
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 16 tgttgacagaagatagagagcactaaggatgacatgca 53
>48337_bna-miR156b:pmrd
Length = 208
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatgaaatgca 56
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 23 tgttgacagaagatagagagcactaaggatgacatgca 60
>46926_ath-miR157c:pmrd
Length = 217
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcactgatgatgaaatgca 56
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 22 tgttgacagaagatagagagcactaaggatgacatgca 59
>46861_aqc-miR156a:pmrd
Length = 81
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 22 tgacagaagatagagagcactgatgatgaaatgcatg 58
|||||||||||||||||||| ||||| ||| ||||||
Sbjct: 1 tgacagaagatagagagcacagatgacgaattgcatg 37
>54771_vvi-miR156f:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 ctgttgacagaagatagagagcac 41
||||||||||||||||||||||||
Sbjct: 8 ctgttgacagaagatagagagcac 31
>48698_mtr-miR157:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 tcctttgtgctctctagtcttctgtcat 105
||||||||||||||||| ||||||||||
Sbjct: 84 tcctttgtgctctctagacttctgtcat 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagcactgatgatgaaatgcat 57
|||||||||||||||| ||||| | ||||| ||||||
Sbjct: 1 ttgacagaagatagagggcactaaggatgatatgcat 37
>48696_mtr-miR156f:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcac 41
|||||||||||||||||||||||
Sbjct: 4 tgttgacagaagatagagagcac 26
>48530_gma-miR156c:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tgttgacagaagatagagagcac 41
|||||||||||||||||||||||
Sbjct: 144 tgttgacagaagatagagagcac 166
>46857_ahy-miR157k:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 83 tgtgctctctagtcttctgtcatcatc 109
||||||||||| |||||||||||||||
Sbjct: 84 tgtgctctctactcttctgtcatcatc 110
>54570_smo-miR156b:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tgctgttgacagaagatagagagcac 41
||||| ||||||||||||||||||||
Sbjct: 6 tgctgctgacagaagatagagagcac 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 gtgctctctagtcttctgtcatca 107
|||||||||| |||||||||||||
Sbjct: 80 gtgctctctattcttctgtcatca 103
>54534_sly-miR156c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagcac 41
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagcac 41
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48675_lja-miR157a:pmrd
Length = 58
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagcac 41
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48642_han-miR157a:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagcac 41
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>46927_ath-miR157d:pmrd
Length = 221
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagatagagagcact 42
|||||||||||||||||||||
Sbjct: 24 tgacagaagatagagagcact 44
>54537_sly-miR157c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagca 40
||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagca 40
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagca 40
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>51552_pta-miR156b:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagatagagagcac 41
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51551_pta-miR156a:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagatagagagcac 41
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51323_pco-miR157:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagca 40
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagca 40
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagca 40
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagca 40
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagatagagagca 40
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
