miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48575_gma-miR390b:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcaccgtgatactgatgattatatgttcatagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcaccgtgatactgatgattatatgttcatagtt 60
Query: 61 gtatacgtacttggcgctatctatcttgagcttcatggcttct 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtatacgtacttggcgctatctatcttgagcttcatggcttct 103
>48371_bna-miR390b:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagc 35
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagc 35
>46995_ath-miR390a:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagc 35
>54848_vvi-miR390:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagc 28
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 4 agaatctgttaagctcaggagggatagc 31
>51719_ptc-miR390d:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagc 28
>51717_ptc-miR390b:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagc 28
>51716_ptc-miR390a:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagc 28
>48500_ghr-miR390c:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagc 28
>48499_ghr-miR390b:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 8 agaatctgttaagctcaggagggatagc 35
>48498_ghr-miR390a:pmrd
Length = 124
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagc 32
>48372_bna-miR390c:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ctgtaaagctcaggagggatagc 28
|||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagc 40
>48370_bna-miR390a:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ctgtaaagctcaggagggatagc 28
|||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagc 50
>51718_ptc-miR390c:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 atctgtaaagctcaggagggatagc 28
|||||| ||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagc 28
>46996_ath-miR390b:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 taaagctcaggagggatagc 28
||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagc 32
