miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48578_gma-miR396a:pmrd
Length = 140
Score = 278 bits (140), Expect = 1e-75
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 tcatggctctctttgtattcttccacagctttcttgaactgcatccaaagagttcctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatggctctctttgtattcttccacagctttcttgaactgcatccaaagagttcctttg 60
Query: 61 catgcatgccatggcactcttactcccaaatcttgttttgcggttcaataaagctgtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgcatgccatggcactcttactcccaaatcttgttttgcggttcaataaagctgtggg 120
Query: 121 aagatacagatagggtcaac 140
||||||||||||||||||||
Sbjct: 121 aagatacagatagggtcaac 140
>48485_gcl-miR396a:pmrd
Length = 101
Score = 161 bits (81), Expect = 2e-40
Identities = 96/101 (95%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaactgcatccaaagagttcctttgcatgcatgccatggcactct 80
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatccatagagttccttggcatgcatgccatggcactct 42
Query: 81 tactcccaaatcttgttttgcggttcaataaagctgtggga 121
| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 41 tgctcccacaccttgttttgcggttcaataaagctgtggga 1
>48486_gcl-miR396b:pmrd
Length = 101
Score = 123 bits (62), Expect = 4e-29
Identities = 94/102 (92%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcatccaaagagttcctttgcatgcatgccatggca-ctc 79
||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct: 1 ttccatagctttcttgaactgcatccatagagttccttrgcatgcatgccatggcatctc 60
Query: 80 ttactcccaaatcttgttttgcggttcaataaagctgtggga 121
| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 61 -tgctcccacaccttgttttgcggttcaataaagctgtggga 101
>48680_lja-miR396:pmrd
Length = 108
Score = 77.8 bits (39), Expect = 2e-15
Identities = 102/127 (80%), Gaps = 22/127 (17%)
Strand = Plus / Plus
Query: 9 ctctttgtattcttccacagctttcttgaactgcatccaaagagttcctttgcatgcatg 68
|||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 4 ctctttgtattcttccacagctttcttgaactgcattcaa---------ttgcatgcatg 54
Query: 69 ccatggcactcttactcccaaatcttgttttgcggttcaataaagctgtgggaagataca 128
||||| |||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 55 ccatgacactctta-------------ttttgcggttcaataaagctgtgggaagatata 101
Query: 129 gataggg 135
|||||||
Sbjct: 102 gataggg 108
>54871_vvi-miR396d:pmrd
Length = 120
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 11 ctttgtattcttccacagctttcttgaactgcat 44
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 98 ttgcggttcaataaagctgtgggaagatac 127
||||||||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagatac 114
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 97 tttgcggttcaataaagctgtgggaagatacaga 130
||||||||||||||||||||||||||||||||||
Sbjct: 124 tttgcggttcaataaagctgtgggaagatacaga 157
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 9 ctctttgtattcttccacagctttcttgaactgca 43
|||| ||||||||||||||||||||||||||||||
Sbjct: 6 ctctctgtattcttccacagctttcttgaactgca 40
>47008_ath-miR396a:pmrd
Length = 151
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 97 tttgcggttcaataaagctgtgggaagatacaga 130
||||||||||||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacaga 150
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 tgtattcttccacagctttcttgaactgca 43
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
>51735_ptc-miR396b:pmrd
Length = 132
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 11 ctttgtattcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 99 tgcggttcaataaagctgtgggaagataca 128
||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagataca 131
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 13 ttgtattcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgca 31
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 99 tgcggttcaataaagctgtgggaagataca 128
||||||||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagataca 129
>51734_ptc-miR396a:pmrd
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 98 ttgcggttcaataaagctgtgggaagataca 128
|||||||||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagataca 122
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 15 gtattcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>55073_zma-miR396b:pmrd
Length = 136
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 tctttgtattcttccacagctttcttgaactgcatc 45
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gttcaataaagctgtgggaa 122
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>54645_sof-miR396:pmrd
Length = 134
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 tctttgtattcttccacagctttcttgaactgcatc 45
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gttcaataaagctgtgggaa 122
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 tctttgtattcttccacagctttcttgaactgcatc 45
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gttcaataaagctgtgggaa 122
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>55079_zma-miR396h:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgcatc 45
|||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcatc 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gttcaataaagctgtgggaa 122
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>48946_osa-miR396b:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgcatc 45
|||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatc 35
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gttcaataaagctgtgggaa 122
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>55074_zma-miR396c:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgcat 44
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gttcaataaagctgtgggaa 122
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55072_zma-miR396a:pmrd
Length = 137
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgcat 44
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gttcaataaagctgtgggaa 122
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54485_sbi-miR396a:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgcat 44
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gttcaataaagctgtgggaa 122
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>46887_aqc-miR396a:pmrd
Length = 122
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 tttgcggttcaataaagctgtgggaa 122
||||||||||||||||||||||||||
Sbjct: 96 tttgcggttcaataaagctgtgggaa 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcat 44
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55083_zma-miR396l:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcatc 45
|||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatc 25
>48945_osa-miR396a:pmrd
Length = 154
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgca 43
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gttcaataaagctgtgggaa 122
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcat 44
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgcat 44
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>48508_ghr-miR396c:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 ttgcggttcaataaagctgtggga 121
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgca 43
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 ttgcggttcaataaagctgtggga 121
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgca 43
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactg 41
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
