miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48579_gma-miR396b:pmrd
          Length = 126

 Score =  250 bits (126), Expect = 2e-67
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaagtcctggtcatgcttttccacagctttcttgaacttcttatgcatcttatatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctcaagtcctggtcatgcttttccacagctttcttgaacttcttatgcatcttatatctc 60

                                                                       
Query: 61  tccacctccaggattttaagccctagaagctcaagaaagctgtgggagaatatggcaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tccacctccaggattttaagccctagaagctcaagaaagctgtgggagaatatggcaatt 120

                 
Query: 121 caggct 126
           ||||||
Sbjct: 121 caggct 126




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 82/97 (84%), Gaps = 4/97 (4%)
 Strand = Plus / Plus

                                                                       
Query: 16  tgcttttccacagctttcttgaacttcttatgcatcttatatctctccacctccaggatt 75
           |||||||||||||||||||||||||||||  | |||||| |||| |     | || ||||
Sbjct: 1   tgcttttccacagctttcttgaacttctttcgtatcttaaatctgtt----ttcaagatt 56

                                                
Query: 76  ttaagccctagaagctcaagaaagctgtgggagaata 112
             ||| |||||||||||||||||||||||||||||||
Sbjct: 57  aaaagtcctagaagctcaagaaagctgtgggagaata 93




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 11 ggtcatgcttttccacagctttcttgaacttctt 44
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttctt 34



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 86  gaagctcaagaaagctgtgggagaatatgg 115
           ||||||||||||||||||||||||| ||||
Sbjct: 116 gaagctcaagaaagctgtgggagaacatgg 145




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 15 atgcttttccacagctttcttgaacttcttatgc 48
          ||||||||||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttcttatgc 48




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 11 ggtcatgcttttccacagctttcttgaacttc 42
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttc 32



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 86  gaagctcaagaaagctgtgggagaatatgg 115
           ||||||||||||||| ||||||||| ||||
Sbjct: 125 gaagctcaagaaagccgtgggagaacatgg 154




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 14 catgcttttccacagctttcttgaacttctt 44
          |||||||||||||||||||||||||||||||
Sbjct: 7  catgcttttccacagctttcttgaacttctt 37



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 14  catgcttttccacagctttcttgaacttc 42
           |||| ||| ||||||||||||||||||||
Sbjct: 104 catggtttcccacagctttcttgaacttc 76




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 14  catgcttttccacagctttcttgaacttctt 44
           |||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 86  gaagctcaagaaagctgtgggagaa 110
           |||||||||||||||||||||||||
Sbjct: 29  gaagctcaagaaagctgtgggagaa 5




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 14  catgcttttccacagctttcttgaacttctt 44
           |||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 86  gaagctcaagaaagctgtgggagaa 110
           |||||||||||||||||||||||||
Sbjct: 29  gaagctcaagaaagctgtgggagaa 5




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 12 gtcatgcttttccacagctttcttgaact 40
          |||||||||||||||||||||||||||||
Sbjct: 5  gtcatgcttttccacagctttcttgaact 33



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 84  tagaagctcaagaaagctgtgggagaatatggcaa 118
           ||||||||||||||||||||||||| | |||||||
Sbjct: 82  tagaagctcaagaaagctgtgggaggacatggcaa 116




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 15  atgcttttccacagctttcttgaacttc 42
           ||||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaacttc 121



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 86  gaagctcaagaaagctgtgggagaa 110
           ||||||||||||||| |||||||||
Sbjct: 28  gaagctcaagaaagccgtgggagaa 4




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 11 ggtcatgcttttccacagctttcttgaactt 41
          |||||| ||||||||||||||||||||||||
Sbjct: 1  ggtcatacttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 86  gaagctcaagaaagctgtggga 107
           ||||||||||||||||||||||
Sbjct: 104 gaagctcaagaaagctgtggga 125




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 14 catgcttttccacagctttcttgaacttct 43
          ||||| ||||||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaacttct 43




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 12 gtcatgcttttccacagctttcttgaacttctta 45
          |||||||| |||||| ||||||||||||||||||
Sbjct: 1  gtcatgctattccacggctttcttgaacttctta 34



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 14  catgcttttccacagctttcttgaacttc 42
           |||| ||||||||||||||||||||||||
Sbjct: 100 catgtttttccacagctttcttgaacttc 72




>51564_pta-miR396:pmrd
          Length = 119

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 gtcatgcttttccacagctttcttgaactt 41
          ||||| ||||||||||||||||||||||||
Sbjct: 8  gtcatacttttccacagctttcttgaactt 37



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 14  catgcttttccacagctttcttgaactt 41
           |||||||| |||||| ||||||||||||
Sbjct: 110 catgctttcccacagttttcttgaactt 83




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 14 catgcttttccacagctttcttgaacttct 43
          ||||| ||||||||||||||||||||||||
Sbjct: 4  catgcctttccacagctttcttgaacttct 33




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tttccacagctttcttgaacttctt 44
          |||||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaacttctt 26




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tttccacagctttcttgaacttctt 44
          |||||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaacttctt 26




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 14 catgcttttccacagctttcttgaacttc 42
          |||| ||||||||||||||||||||||||
Sbjct: 4  catgtttttccacagctttcttgaacttc 32



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 13  tcatgcttttccacagctttcttgaacttctta 45
           ||||||| |||||| ||||||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaacttctta 70




>52339_ptc-miRf10517-akr:pmrd
          Length = 164

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 14 catgcttttccacagctttcttgaactt 41
          ||||||||||||| ||||||||||||||
Sbjct: 1  catgcttttccacggctttcttgaactt 28



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 87  aagctcaagaaagctgtgggagaatatg 114
           |||||||||||||| |||||| ||||||
Sbjct: 137 aagctcaagaaagccgtgggaaaatatg 164




>51740_ptc-miR396g:pmrd
          Length = 168

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 14 catgcttttccacagctttcttgaactt 41
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 87  aagctcaagaaagctgtgggagaatatg 114
           |||||||||||||| |||||| ||||||
Sbjct: 140 aagctcaagaaagccgtgggaaaatatg 167




>54584_smo-miR396:pmrd
          Length = 168

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 13 tcatgcttttccacagctttcttgaac 39
          |||||||||||||| ||||||||||||
Sbjct: 3  tcatgcttttccacggctttcttgaac 29



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 23  ccacagctttcttgaacttc 42
           ||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 21 ttccacagctttcttgaacttcttat 46
          ||||||||||||||||||||| ||||
Sbjct: 1  ttccacagctttcttgaactttttat 26




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 ttccacagctttcttgaactt 41
          |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactt 21




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54645_sof-miR396:pmrd
          Length = 134

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 9  ttccacagctttcttgaact 28




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48680_lja-miR396:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  ttccacagctttcttgaact 40
           ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20