miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48581_gma-miR398a:pmrd
Length = 116
Score = 230 bits (116), Expect = 2e-61
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1 ctcggaggagtgaatctgagaacacaaggctggtttgcactgctatatcatctattggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcggaggagtgaatctgagaacacaaggctggtttgcactgctatatcatctattggta 60
Query: 61 taaggtgaatttactttgtgttctcaggtcacccctttgagccaacctgttgacat 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaggtgaatttactttgtgttctcaggtcacccctttgagccaacctgttgacat 116
>48582_gma-miR398b:pmrd
Length = 135
Score = 176 bits (89), Expect = 2e-45
Identities = 109/115 (94%), Gaps = 3/115 (2%)
Strand = Plus / Plus
Query: 5 gaggagtgaatctgagaacacaaggctggtttgcactgctatatcat---ctattggtat 61
|||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct: 21 gaggagtggatctgagaacacaaggctggtttgcactgctatattatgatcgattggtat 80
Query: 62 aaggtgaatttactttgtgttctcaggtcacccctttgagccaacctgttgacat 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aaggtgaatttactttgtgttctcaggtcacccctttgagccaacctgttgacat 135
>47012_ath-miR398a:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 tttgtgttctcaggtcacccctttga 100
||||||||||||||||||||||||||
Sbjct: 73 tttgtgttctcaggtcacccctttga 98
>54874_vvi-miR398a:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 tttgtgttctcaggtcacccctttg 99
|||||||||||||||||||||||||
Sbjct: 71 tttgtgttctcaggtcacccctttg 95
>48391_bol-miR398a:pmrd
Length = 95
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 ttgtgttctcaggtcacccctttga 100
|||||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccctttga 94
>48390_bol-miR398a:pmrd
Length = 95
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 ttgtgttctcaggtcacccctttga 100
|||||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccctttga 94
>46889_aqc-miR398a:pmrd
Length = 92
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 tttgtgttctcaggtcacccctttg 99
|||||||||||||||||||||||||
Sbjct: 64 tttgtgttctcaggtcacccctttg 88
>52988_ptc-miRf11166-akr:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcacccctttg 99
|||||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccctttg 97
>51744_ptc-miR398a:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcacccctttg 99
|||||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctttg 102
>48962_osa-miR398a:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcacccctttg 99
|||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctttg 107
>48511_ghr-miR398:pmrd
Length = 67
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 ttgtgttctcaggtcacccctt 97
||||||||||||||||||||||
Sbjct: 46 ttgtgttctcaggtcacccctt 67
>47014_ath-miR398c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcacccct 96
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>47013_ath-miR398b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcacccct 96
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
