miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48588_gma-miR1507a:pmrd
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 cagtgtttggcagaggtgtatggagtgagagaagggaaagggtattttccgattctgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtgtttggcagaggtgtatggagtgagagaagggaaagggtattttccgattctgtcg 60
Query: 61 ttactctcttccctctctcattccatacatcgtctgacgaacgtatc 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttactctcttccctctctcattccatacatcgtctgacgaacgtatc 107
>48589_gma-miR1507b:pmrd
Length = 98
Score = 139 bits (70), Expect = 5e-34
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 5 gtttggcagaggtgtatggagtgagagaagggaaagggtattttccgattctgtcgttac 64
||||| ||||| ||||||||||||||||||||||| | ||||||||||| | |||||||
Sbjct: 1 gtttgacagagatgtatggagtgagagaagggaaatgatattttccgatcccatcgttac 60
Query: 65 tctcttccctctctcattccatacatcgtctgacgaac 102
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcttccctctctcattccatacatcgtctgacgaac 98
>54764_vun-miR1507b:pmrd
Length = 109
Score = 81.8 bits (41), Expect = 9e-17
Identities = 87/101 (86%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 6 tttggcagaggtgtatggagtgagagaagggaaagg-gtattttccgattctgtcgttac 64
|||||||||||||||||||||||||||||||||| | ||| ||||| ||| | |
Sbjct: 7 tttggcagaggtgtatggagtgagagaagggaaaaacgcctttcccgatctcatcggttc 66
Query: 65 tctcttccctctctcattccatacatcgtctgacgaacgta 105
| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 67 tttctttcctctctcattccatacatcgtctgacgaacgta 107
>54763_vun-miR1507a:pmrd
Length = 109
Score = 73.8 bits (37), Expect = 2e-14
Identities = 86/101 (85%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 6 tttggcagaggtgtatggagtgagagaaggg-aaagggtattttccgattctgtcgttac 64
||||||||||||||||||||||||||||||| ||| | ||| ||||| ||| | |
Sbjct: 7 tttggcagaggtgtatggagtgagagaagggaaaaacgcctttgccgatctcatcggttc 66
Query: 65 tctcttccctctctcattccatacatcgtctgacgaacgta 105
| | || ||||||||||||||||||||||||||||||||||
Sbjct: 67 tttttttcctctctcattccatacatcgtctgacgaacgta 107