miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48588_gma-miR1507a:pmrd
Length = 107
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 gtttgtcagaggtgtatggagtgagagaagggaaagggtattttccgattctgtcgttac 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtttggcagaggtgtatggagtgagagaagggaaagggtattttccgattctgtcgttac 64
Query: 61 tctcttccctctctcattccatacatcgtctgacgaac 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tctcttccctctctcattccatacatcgtctgacgaac 102
>48589_gma-miR1507b:pmrd
Length = 98
Score = 139 bits (70), Expect = 4e-34
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 1 gtttgtcagaggtgtatggagtgagagaagggaaagggtattttccgattctgtcgttac 60
||||| ||||| ||||||||||||||||||||||| | ||||||||||| | |||||||
Sbjct: 1 gtttgacagagatgtatggagtgagagaagggaaatgatattttccgatcccatcgttac 60
Query: 61 tctcttccctctctcattccatacatcgtctgacgaac 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcttccctctctcattccatacatcgtctgacgaac 98
>54764_vun-miR1507b:pmrd
Length = 109
Score = 67.9 bits (34), Expect = 1e-12
Identities = 83/98 (84%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 2 tttgtcagaggtgtatggagtgagagaagggaaagg-gtattttccgattctgtcgttac 60
|||| ||||||||||||||||||||||||||||| | ||| ||||| ||| | |
Sbjct: 7 tttggcagaggtgtatggagtgagagaagggaaaaacgcctttcccgatctcatcggttc 66
Query: 61 tctcttccctctctcattccatacatcgtctgacgaac 98
| |||| |||||||||||||||||||||||||||||||
Sbjct: 67 tttctttcctctctcattccatacatcgtctgacgaac 104
>54763_vun-miR1507a:pmrd
Length = 109
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 68 cctctctcattccatacatcgtctgacgaac 98
|||||||||||||||||||||||||||||||
Sbjct: 74 cctctctcattccatacatcgtctgacgaac 104
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 2 tttgtcagaggtgtatggagtgagagaagggaaa 35
|||| |||||||||||||||||||||||||||||
Sbjct: 7 tttggcagaggtgtatggagtgagagaagggaaa 40