miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48578_gma-miR396a:pmrd
Length = 140
Score = 77.8 bits (39), Expect = 1e-15
Identities = 48/50 (96%), Gaps = 2/50 (4%)
Strand = Plus / Plus
Query: 1 tattcttccacagctttcttgaactgcatccaaattgagttcctttgcat 50
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 16 tattcttccacagctttcttgaactgcatccaaa--gagttcctttgcat 63
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 62 ttgttttgcggttcaataaagctgtgggaagata 95
||||||||||||||||||||||||||||||||||
Sbjct: 93 ttgttttgcggttcaataaagctgtgggaagata 126
>48680_lja-miR396:pmrd
Length = 108
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 65 ttttgcggttcaataaagctgtgggaagata 95
|||||||||||||||||||||||||||||||
Sbjct: 69 ttttgcggttcaataaagctgtgggaagata 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tattcttccacagctttcttgaactgcat 29
|||||||||||||||||||||||||||||
Sbjct: 11 tattcttccacagctttcttgaactgcat 39
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 61 attgttttgcggttcaataaagctgtgggaagata 95
|||| ||||||||||||||||||||||||||||||
Sbjct: 119 attgatttgcggttcaataaagctgtgggaagata 153
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tattcttccacagctttcttgaactgca 28
||||||||||||||||||||||||||||
Sbjct: 13 tattcttccacagctttcttgaactgca 40
>47008_ath-miR396a:pmrd
Length = 151
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 61 attgttttgcggttcaataaagctgtgggaagata 95
|||| ||||||||||||||||||||||||||||||
Sbjct: 112 attgatttgcggttcaataaagctgtgggaagata 146
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tattcttccacagctttcttgaactgca 28
||||||||||||||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>54871_vvi-miR396d:pmrd
Length = 120
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tattcttccacagctttcttgaactgcat 29
|||||||||||||||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgcat 34
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 67 ttgcggttcaataaagctgtgggaagata 95
|||||||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagata 113
>51734_ptc-miR396a:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 67 ttgcggttcaataaagctgtgggaagata 95
|||||||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagata 120
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tattcttccacagctttcttgaactgca 28
||||||||||||||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>48486_gcl-miR396b:pmrd
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 62 ttgttttgcggttcaataaagctgtggga 90
|||||||||||||||||||||||||||||
Sbjct: 73 ttgttttgcggttcaataaagctgtggga 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactgcatcca 32
||||| |||||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcatcca 27
>48485_gcl-miR396a:pmrd
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 62 ttgttttgcggttcaataaagctgtggga 90
|||||||||||||||||||||||||||||
Sbjct: 29 ttgttttgcggttcaataaagctgtggga 1
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 6 ttccacagctttcttgaactgcatcca 32
|||||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatcca 75
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tattcttccacagctttcttgaactgca 28
||||||||||||||||||||||||||||
Sbjct: 4 tattcttccacagctttcttgaactgca 31
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 tgcggttcaataaagctgtgggaagata 95
||||||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagata 127
>51735_ptc-miR396b:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tattcttccacagctttcttgaactgca 28
||||||||||||||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 tgcggttcaataaagctgtgggaagata 95
||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagata 129
>55079_zma-miR396h:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactgcatc 30
|||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcatc 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gttcaataaagctgtgggaa 91
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>55073_zma-miR396b:pmrd
Length = 136
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactgcatc 30
|||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gttcaataaagctgtgggaa 91
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>54645_sof-miR396:pmrd
Length = 134
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactgcatc 30
|||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gttcaataaagctgtgggaa 91
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactgcatc 30
|||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gttcaataaagctgtgggaa 91
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>48946_osa-miR396b:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactgcatc 30
|||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatc 35
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gttcaataaagctgtgggaa 91
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>55074_zma-miR396c:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactgcat 29
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gttcaataaagctgtgggaa 91
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55072_zma-miR396a:pmrd
Length = 137
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactgcat 29
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gttcaataaagctgtgggaa 91
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54485_sbi-miR396a:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactgcat 29
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gttcaataaagctgtgggaa 91
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>46887_aqc-miR396a:pmrd
Length = 122
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 66 tttgcggttcaataaagctgtgggaa 91
||||||||||||||||||||||||||
Sbjct: 96 tttgcggttcaataaagctgtgggaa 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactgcat 29
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55083_zma-miR396l:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactgcatc 30
|||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatc 25
>48945_osa-miR396a:pmrd
Length = 154
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactgca 28
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gttcaataaagctgtgggaa 91
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactgcat 29
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactgcat 29
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>48508_ghr-miR396c:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 ttgcggttcaataaagctgtggga 90
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactgca 28
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 ttgcggttcaataaagctgtggga 90
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactgca 28
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tcttccacagctttcttgaactg 26
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactgc 27
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
