miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48758_mtr-miR399j:pmrd
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 6 taggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgcttcta 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgcttcta 60
Query: 66 gtttgccaaagaagatttgccctg 89
||||||||||||||||||||||||
Sbjct: 61 gtttgccaaagaagatttgccctg 84
>48752_mtr-miR399c:pmrd
Length = 119
Score = 65.9 bits (33), Expect = 5e-12
Identities = 79/94 (84%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 1 aatgataggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgc 60
|||||||||| ||||||||||||||||||||||| || | | ||| |||| | ||
Sbjct: 16 aatgatagggaaaatctcttttggcagagaggag----taaaaatcttaaacaggaatgt 71
Query: 61 ttctagtttgccaaagaagatttgccctgccatt 94
|||| ||||||||||| |||||||||||||||||
Sbjct: 72 ttctggtttgccaaaggagatttgccctgccatt 105
>54884_vvi-miR399h:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 67 tttgccaaagaagatttgccctgccatt 94
|||||||||| ||| |||||||||||||
Sbjct: 58 tttgccaaaggagaattgccctgccatt 85
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 67 tttgccaaagaagatttgccctgccatt 94
|||||||||| ||| |||||||||||||
Sbjct: 29 tttgccaaaggagaattgccctgccatt 2
>51752_ptc-miR399f:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 67 tttgccaaagaagatttgccctgccatt 94
|||||||||| ||| |||||||||||||
Sbjct: 70 tttgccaaaggagaattgccctgccatt 97
