miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54385_pvu-miR2118:pmrd
Length = 95
Score = 172 bits (87), Expect = 4e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 18 atgggagatgggtgggttggtaaaacataagagaatgaatatttctcactctgttttgcc 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 atgggagatgggtgggttggtaaaacataagagaatgaatatttctcactctgttttgcc 68
Query: 78 gattccacccattcctatgatttcctt 104
|||||||||||||||||||||||||||
Sbjct: 69 gattccacccattcctatgatttcctt 95
>54765_vun-miR2118:pmrd
Length = 129
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 71 ttttgccgattccacccattcctatgatttcctt 104
||||||||||||||||||||||||||||||||||
Sbjct: 96 ttttgccgattccacccattcctatgatttcctt 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 gaggaagtgatgggagatgggtgggttggtaaa 41
||||||||||||||||||||| |||| ||||||
Sbjct: 1 gaggaagtgatgggagatgggagggtcggtaaa 33
>48628_gma-miR2118:pmrd
Length = 129
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 71 ttttgccgattccacccattcctatgatttcctt 104
||||||||||||||||||||||||||||||||||
Sbjct: 96 ttttgccgattccacccattcctatgatttcctt 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 gaggaagtgatgggagatgggtgggttggtaaa 41
||||||||||||||||||||| |||| ||||||
Sbjct: 1 gaggaagtgatgggagatgggagggtcggtaaa 33
>48778_mtr-miR2118:pmrd
Length = 92
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 76 ccgattccacccattcctatgatttcctttggttc 110
|||||||||||||||||||| ||||||||| ||||
Sbjct: 58 ccgattccacccattcctattatttccttttgttc 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3 gagcttgaggaagtgatgggagatgggtgggttggtaaaaca 44
|||||||||||||| |||||| ||||| || | |||||||||
Sbjct: 1 gagcttgaggaagttatgggatatgggaggatcggtaaaaca 42
