miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48490_ghr-miR156c:pmrd
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgtcagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgcta 60
Query: 61 gaagctatgtgtgctcaccctctatctgtcatccact 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagctatgtgtgctcaccctctatctgtcatccact 97
>48489_ghr-miR156b:pmrd
Length = 113
Score = 137 bits (69), Expect = 2e-33
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgcta 60
|||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacacagggtactttcttgcatgcttgagcctttcatgctt 60
Query: 61 gaagctatgtgtgctcaccctctatctgtcatccact 97
|||||| || |||||||||||||||||||||||||||
Sbjct: 61 gaagctctgcgtgctcaccctctatctgtcatccact 97
>48488_ghr-miR156a:pmrd
Length = 104
Score = 137 bits (69), Expect = 2e-33
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgcta 60
|||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 7 ggtgacagaagagagtgagcacacagggtactttcttgcatgcttgagcctttcatgctt 66
Query: 61 gaagctatgtgtgctcaccctctatctgtcatccact 97
|||||| || |||||||||||||||||||||||||||
Sbjct: 67 gaagctctgcgtgctcaccctctatctgtcatccact 103
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 5e-09
Identities = 77/92 (83%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggtt-ctttgtagcatgcttgagcctttcatgct 59
|||| |||||||||||||||||||| ||| |||| | |||| |||| || ||||||
Sbjct: 1 ggtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgct 60
Query: 60 agaagctatgtgtgctcaccctctatctgtca 91
|||||||||||||||||| ||||||| ||||
Sbjct: 61 tgaagctatgtgtgctcactctctatccgtca 92
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 5e-09
Identities = 77/92 (83%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggtt-ctttgtagcatgcttgagcctttcatgct 59
|||| |||||||||||||||||||| ||| |||| | |||| |||| || ||||||
Sbjct: 1 ggtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgct 60
Query: 60 agaagctatgtgtgctcaccctctatctgtca 91
|||||||||||||||||| ||||||| ||||
Sbjct: 61 tgaagctatgtgtgctcactctctatccgtca 92
>46915_ath-miR156f:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 5e-09
Identities = 77/92 (83%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggtt-ctttgtagcatgcttgagcctttcatgct 59
|||| |||||||||||||||||||| ||| |||| | |||| |||| || ||||||
Sbjct: 19 ggtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgct 78
Query: 60 agaagctatgtgtgctcaccctctatctgtca 91
|||||||||||||||||| ||||||| ||||
Sbjct: 79 tgaagctatgtgtgctcactctctatccgtca 110
>54912_zma-miR156b:pmrd
Length = 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 53 tcatgctagaagctatgtgtgctcaccctctatctgtca 91
||||||||| |||| || |||||||||||||||||||||
Sbjct: 66 tcatgctaggagctgtgcgtgctcaccctctatctgtca 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 2e-08
Identities = 71/86 (82%), Gaps = 6/86 (6%)
Strand = Plus / Minus
Query: 6 cagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgctagaagc 65
|||||||||||||||||||||||| |||| | |||| | | |||||||| |||||
Sbjct: 90 cagaagagagtgagcacacagggtactttcttgcat------gacgttcatgcttgaagc 37
Query: 66 tatgtgtgctcaccctctatctgtca 91
| || |||| ||||||||||||||||
Sbjct: 36 tttgcgtgcccaccctctatctgtca 11
>51594_ptc-miR156d:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 71/86 (82%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgctagaagc 65
|||||||||||||||||||||||| |||| | |||| | | |||||||| |||||
Sbjct: 14 cagaagagagtgagcacacagggtactttcttgcat------gacgttcatgcttgaagc 67
Query: 66 tatgtgtgctcaccctctatctgtca 91
| || |||| ||||||||||||||||
Sbjct: 68 tttgcgtgcccaccctctatctgtca 93
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttcttt 34
|||| |||||||||||||||||||||||| ||||
Sbjct: 1 ggtgacagaagagagtgagcacacagggtacttt 34
>51592_ptc-miR156b:pmrd
Length = 101
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttcttt 34
|||| |||||||||||||||||||||||| ||||
Sbjct: 9 ggtgacagaagagagtgagcacacagggtacttt 42
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 51 tttcatgctagaagctatgtgtgctcaccctctatctgtca 91
||||||||| ||||||||||||||| || |||| |||||||
Sbjct: 41 tttcatgcttgaagctatgtgtgcttactctctctctgtca 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 93 cagaagagagtgagcacaca 74
>46914_ath-miR156e:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 51 tttcatgctagaagctatgtgtgctcaccctctatctgtca 91
||||||||| ||||||||||||||| || |||| |||||||
Sbjct: 62 tttcatgcttgaagctatgtgtgcttactctctctctgtca 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacaca 25
|||| ||||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacaca 29
>54768_vvi-miR156c:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 54 catgctagaagctatgtgtgctcaccctctatctgtcatc 93
|||||| |||||| || |||||||| ||||||||||||||
Sbjct: 55 catgcttgaagctctgcgtgctcactctctatctgtcatc 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacaca 25
|||| ||||||||||||||||||||
Sbjct: 9 ggtgacagaagagagtgagcacaca 33
>51354_ppr-miR156:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 ttcatgctagaagctatgtgtgctcac 78
|||||||| ||||||||||||||||||
Sbjct: 62 ttcatgcttgaagctatgtgtgctcac 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggttcttt 34
|||||||||||||||||||| ||| ||||
Sbjct: 5 cagaagagagtgagcacacatggtgcttt 33
>54922_zma-miR156m:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 53 tcatgctagaagctatgtgtgctcaccctctatctgtc 90
||||||||| |||| || |||||||| |||||||||||
Sbjct: 46 tcatgctaggagctgtgcgtgctcactctctatctgtc 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 72/87 (82%), Gaps = 5/87 (5%)
Strand = Plus / Minus
Query: 6 cagaagagagtgagcacacagggttcttt-gtagcatgcttgagcctttcatgctagaag 64
|||||||||||||||||||| ||| |||| |||||||| |||| |||||| | ||
Sbjct: 86 cagaagagagtgagcacacacggtgctttcttagcatgcaagagc----catgctgggag 31
Query: 65 ctatgtgtgctcaccctctatctgtca 91
|| || |||||||| ||||||||||||
Sbjct: 30 ctgtgcgtgctcactctctatctgtca 4
>48803_osa-miR156c:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 tcatgctagaagctatgtgtgctcac 78
||||||| ||||||||||||||||||
Sbjct: 80 tcatgcttgaagctatgtgtgctcac 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 32 cagaagagagtgagcacaca 51
>48802_osa-miR156b:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 2e-05
Identities = 72/87 (82%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggttcttt-gtagcatgcttgagcctttcatgctagaag 64
|||||||||||||||||||| ||| |||| |||||||| |||| |||||| | ||
Sbjct: 46 cagaagagagtgagcacacacggtgctttcttagcatgcaagagc----catgctgggag 101
Query: 65 ctatgtgtgctcaccctctatctgtca 91
|| || |||||||| ||||||||||||
Sbjct: 102 ctgtgcgtgctcactctctatctgtca 128
>48795_oru-miR156:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 tcatgctagaagctatgtgtgctcac 78
||||||| ||||||||||||||||||
Sbjct: 53 tcatgcttgaagctatgtgtgctcac 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacaca 24
>54911_zma-miR156a:pmrd
Length = 152
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 21 cagaagagagtgagcacacag 41
>54767_vvi-miR156b:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacacag 34
>54401_sbi-miR156i:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 6 cagaagagagtgagcacacag 26
>51595_ptc-miR156e:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacacag 34
>51593_ptc-miR156c:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacacag 34
>48807_osa-miR156g:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 7 cagaagagagtgagcacacag 27
>48806_osa-miR156f:pmrd
Length = 186
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 7 cagaagagagtgagcacacag 27
>48652_hvv-miR156a:pmrd
Length = 394
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacacag 24
>46916_ath-miR156g:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggttcttt 34
|||||||||||||||||||| || |||||
Sbjct: 14 cagaagagagtgagcacacatggctcttt 42
>54924_zma-miR156o:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>54919_zma-miR156i:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 11 ggtgacagaagagagtgagcacac 34
>54918_zma-miR156h:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 18 ggtgacagaagagagtgagcacac 41
>54915_zma-miR156e:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 18 ggtgacagaagagagtgagcacac 41
>54913_zma-miR156c:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
>54395_sbi-miR156c:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>54394_sbi-miR156b:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 11 cagaagagagtgagcacaca 30
>51596_ptc-miR156f:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>51591_ptc-miR156a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacac 28
>48809_osa-miR156i:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacac 24
>48805_osa-miR156e:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 8 ggtgacagaagagagtgagcacac 31
>48801_osa-miR156a:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacac 28
>48336_bna-miR156a:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 9 cagaagagagtgagcacaca 28
>46913_ath-miR156d:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 21 cagaagagagtgagcacaca 40
>46912_ath-miR156c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 15 cagaagagagtgagcacaca 34
>46910_ath-miR156a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
