miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48512_ghr-miR399a:pmrd
          Length = 74

 Score =  147 bits (74), Expect = 1e-36
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agggcttctctgcattggcaggtagatgataactccacatcatgtagttaacctgccaaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agggcttctctgcattggcaggtagatgataactccacatcatgtagttaacctgccaaa 60

                        
Query: 61 ggagagttggcctt 74
          ||||||||||||||
Sbjct: 61 ggagagttggcctt 74




>48088_ath-miRf10988-akr:pmrd
          Length = 129

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 51  acctgccaaaggagagttg 69
           |||||||||||||||||||
Sbjct: 99  acctgccaaaggagagttg 117




>47473_ath-miRf10373-akr:pmrd
          Length = 125

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 51  acctgccaaaggagagttg 69
           |||||||||||||||||||
Sbjct: 97  acctgccaaaggagagttg 115




>47472_ath-miRf10372-akr:pmrd
          Length = 131

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 51  acctgccaaaggagagttg 69
           |||||||||||||||||||
Sbjct: 100 acctgccaaaggagagttg 118




>47016_ath-miR399b:pmrd
          Length = 135

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 51  acctgccaaaggagagttg 69
           |||||||||||||||||||
Sbjct: 102 acctgccaaaggagagttg 120