miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51592_ptc-miR156b:pmrd
Length = 101
Score = 79.8 bits (40), Expect = 4e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 18 aggtgacagaagagagtgagcacacagggttctttcttgcatga 61
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8 aggtgacagaagagagtgagcacacagggtactttcttgcatga 51
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacacagggttctttcttgcatga 61
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacacagggtactttcttgcatga 43
>48488_ghr-miR156a:pmrd
Length = 104
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 18 aggtgacagaagagagtgagcacacagggttctttcttgcatg 60
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6 aggtgacagaagagagtgagcacacagggtactttcttgcatg 48
>48489_ghr-miR156b:pmrd
Length = 113
Score = 75.8 bits (38), Expect = 7e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacacagggttctttcttgcatg 60
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacacagggtactttcttgcatg 42
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 21 tgacagaagagagtgagcacacagggttctttcttgcatga 61
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 93 tgacagaagagagtgagcacacagggtactttcttgcatga 53
>51594_ptc-miR156d:pmrd
Length = 101
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggttctttcttgcatga 61
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11 tgacagaagagagtgagcacacagggtactttcttgcatga 51
>46914_ath-miR156e:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 18 aggtgacagaagagagtgagcacacagggttctttcttgcatg 60
|||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 4 aggtgacagaagagagtgagcacacatggtggtttcttgcatg 46
>48490_ghr-miR156c:pmrd
Length = 97
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacacagggttcttt 52
|||| |||||||||||||||||||||||||||||
Sbjct: 1 ggtgtcagaagagagtgagcacacagggttcttt 34
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 56.0 bits (28), Expect = 6e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 21 tgacagaagagagtgagcacacagggttctttcttgcatg 60
||||||||||||||||||||||| ||| |||||||||||
Sbjct: 96 tgacagaagagagtgagcacacatggtggtttcttgcatg 57
>54768_vvi-miR156c:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 18 aggtgacagaagagagtgagcacacagggttctttcttgcatg 60
|||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 8 aggtgacagaagagagtgagcacacatggtctgttcttgcatg 50
>54394_sbi-miR156b:pmrd
Length = 84
Score = 54.0 bits (27), Expect = 3e-08
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggttctttctt-gcatgagtgcc 66
||||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct: 1 tgacagaagagagtgagcacacacggtggtttcttagcatgagtgcc 47
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 21 tgacagaagagagtgagcacacagggttctttctt 55
||||||||||||||||||||||| ||| |||||||
Sbjct: 89 tgacagaagagagtgagcacacacggtgctttctt 55
>48802_osa-miR156b:pmrd
Length = 176
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggttctttctt 55
||||||||||||||||||||||| ||| |||||||
Sbjct: 43 tgacagaagagagtgagcacacacggtgctttctt 77
>54924_zma-miR156o:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggt-tctttcttgcatga 61
||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacatggtgcctttcttgcatga 42
>54913_zma-miR156c:pmrd
Length = 139
Score = 52.0 bits (26), Expect = 1e-07
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggt-tctttcttgcatga 61
||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 21 tgacagaagagagtgagcacacatggtgcctttcttgcatga 62
>54395_sbi-miR156c:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 1e-07
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggt-tctttcttgcatga 61
||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacatggtgcctttcttgcatga 42
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 52.0 bits (26), Expect = 1e-07
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacacagggt-tctttcttgcat 59
||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacacatggtggctttcttgcat 42
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 52.0 bits (26), Expect = 1e-07
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacacagggt-tctttcttgcat 59
||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacacatggtggctttcttgcat 42
>46915_ath-miR156f:pmrd
Length = 132
Score = 52.0 bits (26), Expect = 1e-07
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacacagggt-tctttcttgcat 59
||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 19 ggtgacagaagagagtgagcacacatggtggctttcttgcat 60
>54770_vvi-miR156e:pmrd
Length = 108
Score = 50.1 bits (25), Expect = 4e-07
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 18 aggtgacagaagagagtgagcacacagggttc-tttcttgcatga 61
|||||||||| |||||||||||| || ||||| ||||||||||||
Sbjct: 8 aggtgacagaggagagtgagcactcatggttcttttcttgcatga 52
>51354_ppr-miR156:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggttc-tttcttgcatg 60
||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttttcttgcatg 42
>48805_osa-miR156e:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 aggtgacagaagagagtgagcacac 42
|||||||||||||||||||||||||
Sbjct: 7 aggtgacagaagagagtgagcacac 31
>48803_osa-miR156c:pmrd
Length = 149
Score = 50.1 bits (25), Expect = 4e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggt-tctttcttgcatg 60
||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 29 tgacagaagagagtgagcacacatggtgactttcttgcatg 69
>48795_oru-miR156:pmrd
Length = 93
Score = 50.1 bits (25), Expect = 4e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggt-tctttcttgcatg 60
||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgactttcttgcatg 42
>46916_ath-miR156g:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 16 gaaggtgacagaagagagtgagcacacagggttcttt 52
||||| |||||||||||||||||||||| || |||||
Sbjct: 6 gaaggcgacagaagagagtgagcacacatggctcttt 42
>54919_zma-miR156i:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacac 42
||||||||||||||||||||||||
Sbjct: 11 ggtgacagaagagagtgagcacac 34
>54918_zma-miR156h:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacac 42
||||||||||||||||||||||||
Sbjct: 18 ggtgacagaagagagtgagcacac 41
>54915_zma-miR156e:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacac 42
||||||||||||||||||||||||
Sbjct: 18 ggtgacagaagagagtgagcacac 41
>54911_zma-miR156a:pmrd
Length = 152
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacacag 41
>54767_vvi-miR156b:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacacag 34
>54401_sbi-miR156i:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacacag 26
>51595_ptc-miR156e:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacacag 34
>51593_ptc-miR156c:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacacag 34
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacac 42
||||||||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacac 28
>48809_osa-miR156i:pmrd
Length = 90
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacac 42
||||||||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacac 24
>48807_osa-miR156g:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacacag 27
>48806_osa-miR156f:pmrd
Length = 186
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacacag 27
>48801_osa-miR156a:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 ggtgacagaagagagtgagcacac 42
||||||||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacac 28
>48652_hvv-miR156a:pmrd
Length = 394
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacag 24
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 gaaggtgacagaagagagtgagcacaca 43
|||| |||||||||||||||||||||||
Sbjct: 1 gaagttgacagaagagagtgagcacaca 28
>46913_ath-miR156d:pmrd
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 gaaggtgacagaagagagtgagcacaca 43
|||| |||||||||||||||||||||||
Sbjct: 13 gaagttgacagaagagagtgagcacaca 40
>54922_zma-miR156m:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>54912_zma-miR156b:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacaca 43
>54400_sbi-miR156h:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>54399_sbi-miR156g:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 8 tgacagaagagagtgagcacaca 30
>51596_ptc-miR156f:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51591_ptc-miR156a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>48336_bna-miR156a:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>46912_ath-miR156c:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 12 tgacagaagagagtgagcacaca 34
>46910_ath-miR156a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacaca 43
>54927_zma-miR156r:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggt-tctttcttgcatga 61
||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 1 tgacagaagagagtgggcacacatggtgcctttcttgcatga 42
>54923_zma-miR156n:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54914_zma-miR156d:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 16 tgacagaagagagtgagcacac 37
>54656_stu-miR156a:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54402_sbi-miR157:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>54393_sbi-miR156a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>51357_ppt-miR156c:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcaca 41
||||||||||||||||||||||
Sbjct: 9 gtgacagaagagagtgagcaca 30
>51355_ppt-miR156a:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcaca 41
||||||||||||||||||||||
Sbjct: 20 gtgacagaagagagtgagcaca 41
>48813_osa-miR156m:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48810_osa-miR156j:pmrd
Length = 165
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 42 tgacagaagagagtgagcacac 63
>48808_osa-miR156h:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacac 30
>48804_osa-miR156d:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>48491_ghr-miR156d:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacac 30
>48425_cpt-miR156a:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
