miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54782_vvi-miR160e:pmrd
Length = 104
Score = 119 bits (60), Expect = 5e-28
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 14 attgttctgcctggctccctgaatgccatctaagaagcttgtcaaagagtgttggctgcc 73
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 4 attgttctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaacc 63
Query: 74 ttcttacatggcatgaggggagtcatgcaggc 105
||| || ||||||||||||||||| ||||||
Sbjct: 64 ttcctatttggcatgaggggagtcaagcaggc 95
>54779_vvi-miR160b:pmrd
Length = 104
Score = 119 bits (60), Expect = 5e-28
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 14 attgttctgcctggctccctgaatgccatctaagaagcttgtcaaagagtgttggctgcc 73
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 4 attgttctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaacc 63
Query: 74 ttcttacatggcatgaggggagtcatgcaggc 105
||| || ||||||||||||||||| ||||||
Sbjct: 64 ttcctatttggcatgaggggagtcaagcaggc 95
>51613_ptc-miR160f:pmrd
Length = 100
Score = 103 bits (52), Expect = 3e-23
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatctaagaagcttgtcaaagagtgttggctgcct-tct 77
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct: 9 tctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctctct 68
Query: 78 tacatggcatgaggggagtcatgcaggc 105
|| ||||||||||||||||| ||||||
Sbjct: 69 aac-tggcatgaggggagtcacgcaggc 95
>51612_ptc-miR160e:pmrd
Length = 100
Score = 99.6 bits (50), Expect = 5e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccatctaagaagcttgtcaaagagtgttggctgccttctta 79
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct: 10 ctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctttcta 69
Query: 80 catggcatgaggggagtc 97
||||||||||||||||
Sbjct: 70 tttggcatgaggggagtc 87
>54778_vvi-miR160a:pmrd
Length = 103
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatctaagaagcttgtcaa 58
||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaagcttgtcaa 48
>46864_aqc-miR160a:pmrd
Length = 83
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccatctaagaagcttgtcaa 58
|||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgcctggctccctggatgccatctaagaagcttgtcaa 38
>48831_osa-miR160f:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccatc 43
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>54409_sbi-miR160f:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccatc 43
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgaatgccatc 23
>51614_ptc-miR160g:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatctaagaa 49
|||||||||||||||| |||||| |||||||
Sbjct: 9 tctgcctggctccctggatgccaactaagaa 39
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatct 44
|||||||||||||||| |||||||||
Sbjct: 9 tctgcctggctccctgtatgccatct 34
>53071_ptc-miRf11249-akr:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 20 ctgcctggctccctgaatgccatctaagaa 49
||||||||||||||| |||||| |||||||
Sbjct: 82 ctgcctggctccctggatgccaactaagaa 53
>50560_osa-miRf11345-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 gcctggctccctgaatgccatc 43
||||||||||||||||||||||
Sbjct: 1 gcctggctccctgaatgccatc 22
>54575_smo-miR160b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccatctaagaagc 51
||||||||||||||| |||||| || ||||||
Sbjct: 12 ctgcctggctccctgtatgccacctgagaagc 43
>51365_ppt-miR160g:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccatctaagaagcttgtcaaa 59
|||||||||||| || ||||||||| |||||||| ||||
Sbjct: 29 ctgcctggctccttgtatgccatctgcgaagcttgacaaa 68
>48704_mtr-miR160e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccatctaagaagct 52
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
>48702_mtr-miR160b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccatctaagaagct 52
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
