miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54781_vvi-miR160d:pmrd
Length = 102
Score = 75.8 bits (38), Expect = 7e-15
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 20 atgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtgga 79
||||||||||||||||||||||||||||||| ||| | | ||| ||||||| |||
Sbjct: 10 atgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcgga 69
Query: 80 tggcatgcgaggagccatgcatgcat 105
|||| |||||||||||||||||||||
Sbjct: 70 tggcgtgcgaggagccatgcatgcat 95
>54783_vvi-miR160f:pmrd
Length = 102
Score = 69.9 bits (35), Expect = 4e-13
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtgg 78
||||||||||||||||||||||||||||| |||||| | | || ||||||||||||
Sbjct: 9 tatgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtgg 68
Query: 79 atggcatgcgaggagccatgcat 101
||||| | ||||||||||||||
Sbjct: 69 atggcgtatgaggagccatgcat 91
>54541_sly-miR160a:pmrd
Length = 129
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgccatttgcaaagc 51
|||||||||||||||||||||||||||||||||
Sbjct: 18 tatgcctggctccctgtatgccatttgcaaagc 50
>46865_aqc-miR160b:pmrd
Length = 82
Score = 65.9 bits (33), Expect = 6e-12
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtggat 80
|||||||||||||||||||||||||| || |||| || | | ||||||| ||||||
Sbjct: 1 tgcctggctccctgtatgccatttgcttagtccatttagtattagatggcctttgtggat 60
Query: 81 ggcatgcgaggagccatgcat 101
||| |||||||||||||||||
Sbjct: 61 ggcgtgcgaggagccatgcat 81
>51615_ptc-miR160h:pmrd
Length = 98
Score = 61.9 bits (31), Expect = 1e-10
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtggat 80
|||||||||||||| |||||||||||| ||| ||||| | |||||||||| ||||||
Sbjct: 11 tgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtggat 70
Query: 81 ggcatgcgaggagccatgcatgc 103
||| ||| | ||| |||||||||
Sbjct: 71 ggcgtgcaacgagtcatgcatgc 93
>51610_ptc-miR160c:pmrd
Length = 98
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgcaaagccca 54
||||||||||||||||||||||||||| ||||||
Sbjct: 11 tgcctggctccctgtatgccatttgcagagccca 44
>51609_ptc-miR160b:pmrd
Length = 98
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgcaaagccca 54
||||||||||||||||||||||||||| ||||||
Sbjct: 11 tgcctggctccctgtatgccatttgcagagccca 44
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 56.0 bits (28), Expect = 6e-09
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 18 gtatgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtg 77
||||||||||||||||||||||||| ||| |||||||| || | || || ||| ||||
Sbjct: 1 gtatgcctggctccctgtatgccatatgctgagcccatcgagtat-cgatgacctccgtg 59
Query: 78 gatggcatgcgaggagccatgcat 101
|||||| | ||||||||||||||
Sbjct: 60 gatggcgtatgaggagccatgcat 83
>46934_ath-miR160a:pmrd
Length = 85
Score = 56.0 bits (28), Expect = 6e-09
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 18 gtatgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtg 77
||||||||||||||||||||||||| ||| |||||||| || | || || ||| ||||
Sbjct: 1 gtatgcctggctccctgtatgccatatgctgagcccatcgagtat-cgatgacctccgtg 59
Query: 78 gatggcatgcgaggagccatgcat 101
|||||| | ||||||||||||||
Sbjct: 60 gatggcgtatgaggagccatgcat 83
>48397_bra-miR160a:pmrd
Length = 127
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 tgtatgcctggctccctgtatgccat 42
||||||||||||||||||||||||||
Sbjct: 22 tgtatgcctggctccctgtatgccat 47
>48396_bra-miR160a:pmrd
Length = 127
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 tgtatgcctggctccctgtatgccat 42
||||||||||||||||||||||||||
Sbjct: 22 tgtatgcctggctccctgtatgccat 47
>48703_mtr-miR160d:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttg 45
|||||||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgccatttg 30
>48542_gma-miR160a:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttg 45
|||||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccatttg 45
>54942_zma-miR160e:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 7 tatgcctggctccctgtatgcca 29
>54941_zma-miR160d:pmrd
Length = 142
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 19 tatgcctggctccctgtatgcca 41
>54675_tae-miR160:pmrd
Length = 148
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 20 tatgcctggctccctgtatgcca 42
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 10 tatgcctggctccctgtatgcca 32
>51611_ptc-miR160d:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcca 31
>51608_ptc-miR160a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcca 31
>48829_osa-miR160d:pmrd
Length = 142
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 6 tatgcctggctccctgtatgcca 28
>48658_hvv-miR160a:pmrd
Length = 344
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 322 tatgcctggctccctgtatgcca 344
>46936_ath-miR160c:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 3 tatgcctggctccctgtatgcca 25
>54946_zma-miR160i:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 atgcctggctccctgtatgcca 41
||||||||||||||||||||||
Sbjct: 1 atgcctggctccctgtatgcca 22
>54943_zma-miR160f:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcc 40
||||||||||||||||||||||
Sbjct: 19 tatgcctggctccctgtatgcc 40
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccat 42
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgc 46
||||||||||||||||||||| ||||
Sbjct: 30 tgcctggctccctgtatgccacttgc 55
>48830_osa-miR160e:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcc 40
||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcc 30
>48704_mtr-miR160e:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccat 42
||||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgccat 27
>48702_mtr-miR160b:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccat 42
||||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgccat 27
>54947_zma-miR160m:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54945_zma-miR160h:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54944_zma-miR160g:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54940_zma-miR160c:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgcca 27
>54939_zma-miR160b:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>54938_zma-miR160a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgcca 30
>54780_vvi-miR160c:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54759_ttu-miR160a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54575_smo-miR160b:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgcca 33
>54408_sbi-miR160e:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54407_sbi-miR160d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54406_sbi-miR160c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54405_sbi-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54404_sbi-miR160a:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>51364_ppt-miR160f:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>51359_ppt-miR160a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51334_pga-miR160:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48833_osa-miR160n:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48832_osa-miR160m:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48828_osa-miR160c:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgcca 27
>48827_osa-miR160b:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>48826_osa-miR160a:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>48791_oba-miR160:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>48635_gra-miR160b:pmrd
Length = 293
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 atgcctggctccctgtatgcc 40
|||||||||||||||||||||
Sbjct: 272 atgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 atgcctggctccctgtatgcc 40
|||||||||||||||||||||
Sbjct: 85 atgcctggctccctgtatgcc 105
>48306_bdi-miR160:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 atgcctggctccctgtatgcc 40
|||||||||||||||||||||
Sbjct: 17 atgcctggctccctgtatgcc 37
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>46935_ath-miR160b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcca 41
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>54760_ttu-miR160b:pmrd
Length = 218
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgcc 40
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
