miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51614_ptc-miR160g:pmrd
Length = 98
Score = 75.8 bits (38), Expect = 7e-15
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 18 atctgcctggctccctggatgccaactaaggatgctgtcgacaaggattggcccttccta 77
|||||||||||||||||||||||||||||| | |||||| | ||| | |||| ||
Sbjct: 8 atctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttgactcttcata 67
Query: 78 gttggcatcagaggagtcaagcaggtccaa 107
||||||||||||||||||| ||||||||||
Sbjct: 68 gttggcatcagaggagtcatgcaggtccaa 97
>53071_ptc-miRf11249-akr:pmrd
Length = 82
Score = 60.0 bits (30), Expect = 4e-10
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 20 ctgcctggctccctggatgccaactaaggatgctgtcgacaaggattggcccttcctagt 79
|||||||||||||||||||||||||||| | |||||| | ||| | |||| ||||
Sbjct: 82 ctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttgactcttcatagt 23
Query: 80 tggcatcagaggagtcaagcag 101
||||||||||||||||| ||||
Sbjct: 22 tggcatcagaggagtcatgcag 1
>54778_vvi-miR160a:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 71 cttcctagttggcatcagaggagtcaagcagg 102
|||||||||||||||||||||||||| |||||
Sbjct: 62 cttcctagttggcatcagaggagtcatgcagg 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 16 tgatctgcctggctccctggatgccaactaag 47
||||||||||||||||||| |||||| |||||
Sbjct: 6 tgatctgcctggctccctgaatgccatctaag 37
>46864_aqc-miR160a:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 tgcctggctccctggatgccaactaag 47
||||||||||||||||||||| |||||
Sbjct: 1 tgcctggctccctggatgccatctaag 27
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 69 cccttcctagttggcatcagaggagtcaagcag 101
||||| |||||||||||||| ||||||| ||||
Sbjct: 50 ccctttctagttggcatcaggggagtcacgcag 82
>54782_vvi-miR160e:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctggatgccaactaag 47
|||||||||||||||| |||||| |||||
Sbjct: 9 tctgcctggctccctgaatgccatctaag 37
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 70 ccttcctagttggcatcagaggagtcaagcagg 102
|||||||| ||||||| || |||||||||||||
Sbjct: 62 ccttcctatttggcatgaggggagtcaagcagg 94
>54779_vvi-miR160b:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctggatgccaactaag 47
|||||||||||||||| |||||| |||||
Sbjct: 9 tctgcctggctccctgaatgccatctaag 37
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 70 ccttcctagttggcatcagaggagtcaagcagg 102
|||||||| ||||||| || |||||||||||||
Sbjct: 62 ccttcctatttggcatgaggggagtcaagcagg 94
>51360_ppt-miR160b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 17 gatctgcctggctccctggatgccaact 44
|||| ||||||||||||| |||||||||
Sbjct: 7 gatccgcctggctccctgtatgccaact 34
