miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48493_ghr-miR162a:pmrd
Length = 148
Score = 190 bits (96), Expect = 2e-49
Identities = 108/112 (96%)
Strand = Plus / Plus
Query: 13 taaagacactggaggcagcggttcatcgatctcttcctgggaattttgttgtgagaataa 72
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 16 taaagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataa 75
Query: 73 cacaaatacatgattcgatcgataaacctctgcatccagagccttacctctc 124
||||||||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct: 76 cacaaatacatgaatcgatcgataaacctctgcatccagcgccttaactctc 127
>48423_cpa-miR162a:pmrd
Length = 109
Score = 101 bits (51), Expect = 1e-22
Identities = 90/99 (90%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 13 taaagacactggaggcagcggttcatcgatctcttcctgggaattttgttgtgagaataa 72
||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| || |
Sbjct: 5 taaagtcactggaggcagcggttcatcgatctcttcctgggaa-tttggtgtga-aaaat 62
Query: 73 cacaaatacatgattcgatcgataaacctctgcatccag 111
|||| | |||||| |||||||||||||||||||||||||
Sbjct: 63 cacaga-acatgaatcgatcgataaacctctgcatccag 100
>54387_rco-miR162:pmrd
Length = 96
Score = 85.7 bits (43), Expect = 7e-18
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctggga-attttgttgtgaga-ataacaca 76
|||||||||||||||||||||||||||||||||| | |||||||||||| | | || |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
Query: 77 aatacatgattcgatcgataaacctctgcatccag 111
|| ||||| |||||||||||||||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccag 95
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 7e-15
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 15 aagacactggaggcagcggttcatcgatctcttcctgg 52
||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aagacactggaggcagcggttcatcgatctcttcctgg 64
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 7e-15
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 15 aagacactggaggcagcggttcatcgatctcttcctgg 52
||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aagacactggaggcagcggttcatcgatctcttcctgg 64
>51616_ptc-miR162a:pmrd
Length = 107
Score = 75.8 bits (38), Expect = 7e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 15 aagacactggaggcagcggttcatcgatctcttcctgg 52
||||||||||||||||||||||||||||||||||||||
Sbjct: 5 aagacactggaggcagcggttcatcgatctcttcctgg 42
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 15 aagacactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||| ||||||
Sbjct: 100 aagacactggaggcagcggttcatcgatcttttcctg 64
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 15 aagacactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||| ||||||
Sbjct: 102 aagacactggaggcagcggttcatcgatcttttcctg 66
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 15 aagacactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||| ||||||
Sbjct: 102 aagacactggaggcagcggttcatcgatcttttcctg 66
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 15 aagacactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||| ||||||
Sbjct: 100 aagacactggaggcagcggttcatcgatcttttcctg 64
>51618_ptc-miR162c:pmrd
Length = 107
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 15 aagacactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||| ||||||
Sbjct: 5 aagacactggaggcagcggttcatcgatcttttcctg 41
>51617_ptc-miR162b:pmrd
Length = 107
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 15 aagacactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||| ||||||
Sbjct: 5 aagacactggaggcagcggttcatcgatcttttcctg 41
>46937_ath-miR162a:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 gatcgataaacctctgcatccag 111
|||||||||||||||||||||||
Sbjct: 87 gatcgataaacctctgcatccag 109
>54784_vvi-miR162:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctg 51
||||||| |||||||||||||||||||||||||
Sbjct: 7 cactggatgcagcggttcatcgatctcttcctg 39
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tcgataaacctctgcatccag 111
|||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatccag 93
>48545_gma-miR162a:pmrd
Length = 102
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctg 51
||||||| |||||||||||||||||||||||||
Sbjct: 8 cactggatgcagcggttcatcgatctcttcctg 40
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 81 catgattcgatcgataaacctctgcatccag 111
||||| |||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccag 93
>48682_llu-miR162:pmrd
Length = 80
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 81 catgattcgatcgataaacctctgcatccag 111
||||| |||||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatccag 80
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
||||| ||||||||| |||||||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctg 31
>48834_osa-miR162a:pmrd
Length = 171
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 tcgatcgataaacctctgcatccag 111
|||||||||||||||||||||||||
Sbjct: 139 tcgatcgataaacctctgcatccag 163
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 87 tcgatcgataaacctctgcatccag 111
|||||||||||||||||||||||||
Sbjct: 39 tcgatcgataaacctctgcatccag 15
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctgggaat 56
||||||||||||||||||||||| |||||| ||||
Sbjct: 102 ctggaggcagcggttcatcgatcaattcctgtgaat 67
>46938_ath-miR162b:pmrd
Length = 111
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 tcgatcgataaacctctgcatccag 111
|||||||||||||||||||||||||
Sbjct: 75 tcgatcgataaacctctgcatccag 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctgggaat 56
||||||||||||||||||||||| |||||| ||||
Sbjct: 12 ctggaggcagcggttcatcgatcaattcctgtgaat 47
>48707_mtr-miR162d:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 80 acatgattcgatcgataaacctctgcatccag 111
|||||| ||| |||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatccag 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
||||| |||||||||||||||||| ||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctg 31
>48706_mtr-miR162c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 80 acatgattcgatcgataaacctctgcatcca 110
|||||| ||| ||||||||||||||||||||
Sbjct: 31 acatgaatcggtcgataaacctctgcatcca 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56
>48705_mtr-miR162b:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 80 acatgattcgatcgataaacctctgcatcca 110
|||||| ||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 22 tggaggcagcggttcatcgatctcttcctg 51
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
>48690_mdo-miR162:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 77/91 (84%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctgggaattttgttgtgagaataacacaaata 80
||||||||| |||||||||||||| || || || |||||||||||| | ||||| | |
Sbjct: 1 ctggaggcatcggttcatcgatctgtttatgaga-ttttgttgtgagta-aacac-agtt 57
Query: 81 catgattcgatcgataaacctctgcatccag 111
||||| ||| ||||||||||| |||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatccag 88
>48835_osa-miR162b:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 tcgatcgataaacctctgcatccaga 112
||||||||||| ||||||||||||||
Sbjct: 100 tcgatcgataagcctctgcatccaga 125
>54948_zma-miR162b:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tcgataaacctctgcatccag 111
|||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tcgataaacctctgcatccag 111
|||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 87 tcgatcgataaacctctgcatccag 111
||||||||||| |||||||||||||
Sbjct: 90 tcgatcgataagcctctgcatccag 114
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tcgataaacctctgcatccag 111
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tcgataaacctctgcatccag 111
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
