miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51624_ptc-miR164f:pmrd
          Length = 90

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 13 agccatgctggagaagcagggcacatgctaaa 44
          ||||||||||||||||||||||||||||||||
Sbjct: 3  agccatgctggagaagcagggcacatgctaaa 34

>54786_vvi-miR164b:pmrd
          Length = 93

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 ccatgctggagaagcagggcacatgct 41
          |||||||||||||||||||||||||||
Sbjct: 5  ccatgctggagaagcagggcacatgct 31

>48841_osa-miR164d:pmrd
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                        
Query: 12 aagccatgctggagaagcagggcacatgct 41
          ||||||||||||||||| || |||||||||
Sbjct: 93 aagccatgctggagaaggagcgcacatgct 64



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 18 tgctggagaagcagggcacatgct 41
          ||||||||||||||||||| ||||
Sbjct: 8  tgctggagaagcagggcacgtgct 31

>54411_sbi-miR164b:pmrd
          Length = 111

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 18 tgctggagaagcagggcacatgct 41
          ||||||||||||||||||| ||||
Sbjct: 18 tgctggagaagcagggcacgtgct 41