miRNEST 2.0, an integrative microRNA resource :: BLAST
>54388_rco-miR168:pmrd
Length = 156
Score = 97.6 bits (49), Expect = 3e-21
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 3 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 51
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
Score = 73.8 bits (37), Expect = 4e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 118 gaattggatcccgccttgcatcaactgaatcggagaccgcggtga 162
|||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtga 154
>48560_gma-miR168:pmrd
Length = 125
Score = 83.8 bits (42), Expect = 4e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 117 cgaattggatcccgccttgcatcaactgaatcggagaccgcggtga 162
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 78 cgaattggatcccgccttgcatcaactgaatcggaggccgcggtga 123
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 9 gcggtctctaattcgcttggtgcaggtcgggaac 42
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>46958_ath-miR168b:pmrd
Length = 124
Score = 83.8 bits (42), Expect = 4e-17
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 3 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggctg 52
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctg 50
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 126 tcccgccttgcatcaactgaatcggagaccgcggtga 162
||||| |||| |||||||||||||||| ||| |||||
Sbjct: 88 tcccgtcttgtatcaactgaatcggagtccgaggtga 124
>51651_ptc-miR168b:pmrd
Length = 136
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaactgatt 37
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 118 gaattggatcccgccttgcatcaactgaatcggaga 153
||||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggaga 136
>51650_ptc-miR168a:pmrd
Length = 160
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 117 cgaattggatcccgccttgcatcaactgaatcggag 152
||||||||||||||||||||||||||||||||||||
Sbjct: 124 cgaattggatcccgccttgcatcaactgaatcggag 159
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47
||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
>48349_bna-miR168:pmrd
Length = 133
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 7 cggcggtctctaattcgcttggtgcaggtcgggaactgattggctg 52
|||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctg 49
>54802_vvi-miR168:pmrd
Length = 132
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 ggtctctaattcgcttggtgcaggtcgggaac 42
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 124 gatcccgccttgcatcaactgaatcggagac 154
|||||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggagac 129
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 120 attggatcccgccttgcatcaactgaatcgga 151
||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcgga 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 attcgcttggtgcaggtcgggaac 42
||||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcgggaac 34
>46957_ath-miR168a:pmrd
Length = 138
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 120 attggatcccgccttgcatcaactgaatcgga 151
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 attcgcttggtgcaggtcgggaac 42
||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaac 39
>54375_pts-miR168b:pmrd
Length = 140
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 117 cgaattggatcccgccttgcatcaactga 145
|||||||||||||||||||||||||||||
Sbjct: 112 cgaattggatcccgccttgcatcaactga 140
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcaggtcgggaactgatt 47
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>54374_pts-miR168a:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 118 gaattggatcccgccttgcatcaactga 145
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcaggtcgggaactgatt 47
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>54366_ptr-miR168:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 118 gaattggatcccgccttgcatcaactga 145
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcaggtcgggaactgatt 47
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 123 ggatcccgccttgcatcaactgaatcggag 152
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>46959_ath-miR168m:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 120 attggatcccgccttgcatcaactga 145
||||||||||||||||||||||||||
Sbjct: 79 attggatcccgccttgcatcaactga 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcaggtcgggaac 42
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>48649_hte-miR168:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcaggtcgggaactg 44
||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactg 24
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 123 ggatcccgccttgcatcaactgaatcggag 152
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 123 ggatcccgccttgcatcaactgaatcggag 152
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 123 ggatcccgccttgcatcaactgaatcggag 152
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 123 ggatcccgccttgcatcaactgaatcggag 152
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 123 ggatcccgccttgcatcaactgaatcggag 152
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 123 ggatcccgccttgcatcaactgaatcggag 152
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 121 ttggatcccgccttgcatcaactga 145
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcaggtcggga 40
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcaggtcggga 40
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
