miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48487_ghb-miR169a:pmrd
Length = 189
Score = 56.0 bits (28), Expect = 7e-09
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 1 gataaagagtctttgtttggtagccagggatgacttgcct 40
||||||||||||| |||||||||||| |||||||||||||
Sbjct: 31 gataaagagtctt-gtttggtagccaaggatgacttgcct 69
>52726_ptc-miRf10904-akr:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||||||||||||| |||||||||||||
Sbjct: 7 ttgtttggtagccaaggatgacttgcct 34
>51670_ptc-miR169m:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||||||||||||| |||||||||||||
Sbjct: 3 ttgtttggtagccaaggatgacttgcct 30
>51668_ptc-miR169k:pmrd
Length = 203
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||||||||||||| |||||||||||||
Sbjct: 3 ttgtttggtagccaaggatgacttgcct 30
>51666_ptc-miR169i:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||||||||||||| |||||||||||||
Sbjct: 3 ttgtttggtagccaaggatgacttgcct 30
>54440_sbi-miR169d:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcctac 42
||||||||||| |||||||||||||||
Sbjct: 16 tttggtagccaaggatgacttgcctac 42
>54439_sbi-miR169c:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcctac 42
||||||||||| |||||||||||||||
Sbjct: 16 tttggtagccaaggatgacttgcctac 42
>51675_ptc-miR169r:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gtttggtagccagggatgacttgccta 41
|||||||||||| ||||||||||||||
Sbjct: 5 gtttggtagccaaggatgacttgccta 31
>48355_bna-miR169f:pmrd
Length = 201
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcctac 42
||||||||||| |||||||||||||||
Sbjct: 26 tttggtagccaaggatgacttgcctac 52
>48353_bna-miR169d:pmrd
Length = 220
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcctac 42
||||||||||| |||||||||||||||
Sbjct: 35 tttggtagccaaggatgacttgcctac 61
>54827_vvi-miR169y:pmrd
Length = 248
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcctac 42
|||||||||||| | |||||||||||||||
Sbjct: 3 ttgtttggtagcgaaggatgacttgcctac 32
>51680_ptc-miR169w:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccagggatgacttgcc 39
||||||||||||| ||||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgcc 28
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 ggcagtcaccttggctatgct 128
|||||||||||||||||||||
Sbjct: 86 ggcagtcaccttggctatgct 106
>51679_ptc-miR169v:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccagggatgacttgcc 39
||||||||||||| ||||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgcc 28
>48354_bna-miR169e:pmrd
Length = 276
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgccta 41
||||||||||| ||||||||||||||
Sbjct: 246 tttggtagccaaggatgacttgccta 271
>48352_bna-miR169c:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgccta 41
||||||||||| ||||||||||||||
Sbjct: 21 tttggtagccaaggatgacttgccta 46
>55009_zma-miR169g:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 tggtagccagggatgacttgcctac 42
||||||||| |||||||||||||||
Sbjct: 18 tggtagccaaggatgacttgcctac 42
>54548_sly-miR169b:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcct 40
||||||||||| |||||||||||||
Sbjct: 166 tttggtagccaaggatgacttgcct 190
>46973_ath-miR169m:pmrd
Length = 212
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcct 40
||||||||||| |||||||||||||
Sbjct: 37 tttggtagccaaggatgacttgcct 61
>46971_ath-miR169k:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcct 40
||||||||||| |||||||||||||
Sbjct: 38 tttggtagccaaggatgacttgcct 62
>46969_ath-miR169i:pmrd
Length = 206
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcct 40
||||||||||| |||||||||||||
Sbjct: 35 tttggtagccaaggatgacttgcct 59
>46873_aqc-miR169a:pmrd
Length = 158
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 14 tgtttggtagccagggatgacttgcctac 42
||||| ||||||| |||||||||||||||
Sbjct: 19 tgtttagtagccaaggatgacttgcctac 47
>54826_vvi-miR169x:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccagggatgacttgccta 41
||||||||| ||||||||||||||
Sbjct: 9 tggtagccaaggatgacttgccta 32
>51669_ptc-miR169l:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
||||||| |||||| |||||||||||||
Sbjct: 3 ttgtttgatagccaaggatgacttgcct 30
>51667_ptc-miR169j:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
||||||| |||||| |||||||||||||
Sbjct: 3 ttgtttgatagccaaggatgacttgcct 30
>48890_osa-miR169o:pmrd
Length = 173
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcctacg 43
||||||||||| | ||||||||||||||
Sbjct: 6 tttggtagccaagaatgacttgcctacg 33
>48882_osa-miR169g:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccagggatgacttgccta 41
||||||||| ||||||||||||||
Sbjct: 8 tggtagccaaggatgacttgccta 31
>48360_bna-miR169k:pmrd
Length = 155
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||| ||||||||| |||||||||||||
Sbjct: 26 ttgtgtggtagccaaggatgacttgcct 53
>48357_bna-miR169h:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||| ||||||||| |||||||||||||
Sbjct: 29 ttgtgtggtagccaaggatgacttgcct 56
>48356_bna-miR169g:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||| ||||||||| |||||||||||||
Sbjct: 29 ttgtgtggtagccaaggatgacttgcct 56
>47103_ath-miRf10003-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||| ||||||||| |||||||||||||
Sbjct: 129 ttgtgtggtagccaaggatgacttgcct 102
>46968_ath-miR169h:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||| ||||||||| |||||||||||||
Sbjct: 38 ttgtgtggtagccaaggatgacttgcct 65
