miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52726_ptc-miRf10904-akr:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctcc 45
|||||||||||||||||||| |||||||||||
Sbjct: 8 tgtttggtagccaaggatgacttgcctgctcc 39
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 77 caggcattcaccttggctaacttgactggctct 109
|||||| || |||||||||||||||||||||||
Sbjct: 100 caggcagtctccttggctaacttgactggctct 132
>51670_ptc-miR169m:pmrd
Length = 119
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctcc 45
|||||||||||||||||||| |||||||||||
Sbjct: 4 tgtttggtagccaaggatgacttgcctgctcc 35
>51666_ptc-miR169i:pmrd
Length = 123
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctcc 45
|||||||||||||||||||| |||||||||||
Sbjct: 4 tgtttggtagccaaggatgacttgcctgctcc 35
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 77 caggcattcaccttggctaacttgactg 104
|||||| || ||||||||||||||||||
Sbjct: 96 caggcagtctccttggctaacttgactg 123
>51667_ptc-miR169j:pmrd
Length = 137
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctccttccaagag 54
|||||| ||||||||||||| ||||||||| ||| ||||||
Sbjct: 4 tgtttgatagccaaggatgacttgcctgctacttgcaagag 44
>48487_ghb-miR169a:pmrd
Length = 189
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgc 42
|||||||||||||||||||| ||||||||
Sbjct: 43 tgtttggtagccaaggatgacttgcctgc 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 76 ccaggcattcaccttggctaacttgactggctcttttc 113
||||||| ||||||||||||||| ||| |||| |||||
Sbjct: 119 ccaggcagtcaccttggctaactagacaggctgttttc 156
>51668_ptc-miR169k:pmrd
Length = 203
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctg 41
|||||||||||||||||||| |||||||
Sbjct: 4 tgtttggtagccaaggatgacttgcctg 31
>46971_ath-miR169k:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcctgct 43
|||||||||||||||||| |||||||||
Sbjct: 38 tttggtagccaaggatgacttgcctgct 65
>54548_sly-miR169b:pmrd
Length = 205
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcctgc 42
|||||||||||||||||| ||||||||
Sbjct: 166 tttggtagccaaggatgacttgcctgc 192
>48361_bna-miR169l:pmrd
Length = 199
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctc 44
||||| |||||||||||||| ||||||||||
Sbjct: 18 tgtttagtagccaaggatgacttgcctgctc 48
>48359_bna-miR169j:pmrd
Length = 167
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctc 44
||||| |||||||||||||| ||||||||||
Sbjct: 2 tgtttagtagccaaggatgacttgcctgctc 32
>48358_bna-miR169i:pmrd
Length = 174
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctc 44
||||| |||||||||||||| ||||||||||
Sbjct: 8 tgtttagtagccaaggatgacttgcctgctc 38
>51680_ptc-miR169w:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcc 39
|||||||||||||||||||| |||||
Sbjct: 3 tgtttggtagccaaggatgacttgcc 28
>51679_ptc-miR169v:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcc 39
|||||||||||||||||||| |||||
Sbjct: 3 tgtttggtagccaaggatgacttgcc 28
>51675_ptc-miR169r:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 gtttggtagccaaggatgagttgcct 40
||||||||||||||||||| ||||||
Sbjct: 5 gtttggtagccaaggatgacttgcct 30
>51669_ptc-miR169l:pmrd
Length = 143
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgct 43
|||||| ||||||||||||| |||||||||
Sbjct: 4 tgtttgatagccaaggatgacttgcctgct 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 tcttgttgggttgccaggcattcaccttggctaa 96
||||||| |||||||||||| || ||||||||||
Sbjct: 103 tcttgtttggttgccaggcagtctccttggctaa 136
>48355_bna-miR169f:pmrd
Length = 201
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 ttctgtttggtagccaaggatgagttgcct 40
|||| |||||||||||||||||| ||||||
Sbjct: 21 ttctatttggtagccaaggatgacttgcct 50
>48353_bna-miR169d:pmrd
Length = 220
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 ttctgtttggtagccaaggatgagttgcct 40
|||| |||||||||||||||||| ||||||
Sbjct: 30 ttctatttggtagccaaggatgacttgcct 59
>46973_ath-miR169m:pmrd
Length = 212
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcctg 41
|||||||||||||||||| |||||||
Sbjct: 37 tttggtagccaaggatgacttgcctg 62
>46969_ath-miR169i:pmrd
Length = 206
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcctg 41
|||||||||||||||||| |||||||
Sbjct: 35 tttggtagccaaggatgacttgcctg 60
>54440_sbi-miR169d:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcct 40
|||||||||||||||||| ||||||
Sbjct: 16 tttggtagccaaggatgacttgcct 40
>54439_sbi-miR169c:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcct 40
|||||||||||||||||| ||||||
Sbjct: 16 tttggtagccaaggatgacttgcct 40
>48360_bna-miR169k:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctgc 42
|||||||||||||||| ||||||||
Sbjct: 31 tggtagccaaggatgacttgcctgc 55
>48357_bna-miR169h:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctgc 42
|||||||||||||||| ||||||||
Sbjct: 34 tggtagccaaggatgacttgcctgc 58
>48356_bna-miR169g:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctgc 42
|||||||||||||||| ||||||||
Sbjct: 34 tggtagccaaggatgacttgcctgc 58
>48354_bna-miR169e:pmrd
Length = 276
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcct 40
|||||||||||||||||| ||||||
Sbjct: 246 tttggtagccaaggatgacttgcct 270
>48352_bna-miR169c:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcct 40
|||||||||||||||||| ||||||
Sbjct: 21 tttggtagccaaggatgacttgcct 45
>47103_ath-miRf10003-akr:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 18 tggtagccaaggatgagttgcctgc 42
|||||||||||||||| ||||||||
Sbjct: 124 tggtagccaaggatgacttgcctgc 100
>46968_ath-miR169h:pmrd
Length = 190
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctgc 42
|||||||||||||||| ||||||||
Sbjct: 43 tggtagccaaggatgacttgcctgc 67
>55013_zma-miR169k:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctg 41
|||||||||||||||| |||||||
Sbjct: 18 tggtagccaaggatgacttgcctg 41
>55011_zma-miR169i:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctg 41
|||||||||||||||| |||||||
Sbjct: 18 tggtagccaaggatgacttgcctg 41
>54442_sbi-miR169f:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctg 41
|||||||||||||||| |||||||
Sbjct: 18 tggtagccaaggatgacttgcctg 41
>54441_sbi-miR169e:pmrd
Length = 240
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctg 41
|||||||||||||||| |||||||
Sbjct: 18 tggtagccaaggatgacttgcctg 41
>48888_osa-miR169m:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctg 41
|||||||||||||||| |||||||
Sbjct: 8 tggtagccaaggatgacttgcctg 31
>48885_osa-miR169j:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctg 41
|||||||||||||||| |||||||
Sbjct: 8 tggtagccaaggatgacttgcctg 31
>48884_osa-miR169i:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctg 41
|||||||||||||||| |||||||
Sbjct: 8 tggtagccaaggatgacttgcctg 31
>48883_osa-miR169h:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctg 41
|||||||||||||||| |||||||
Sbjct: 8 tggtagccaaggatgacttgcctg 31
>46974_ath-miR169n:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctg 41
||||| |||||||||||||| |||||||
Sbjct: 38 tgtttagtagccaaggatgacttgcctg 65
>46970_ath-miR169j:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctg 41
||||| |||||||||||||| |||||||
Sbjct: 44 tgtttagtagccaaggatgacttgcctg 71
