miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54836_vvi-miR171i:pmrd
Length = 103
Score = 103 bits (52), Expect = 3e-23
Identities = 76/83 (91%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 16 ggggatgttggaatggctcaatcaaatcaaatctcccaagctttttatgggtgttttaat 75
|||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct: 10 ggggatgttggaatggctcaatcaaatcaaatctcccaagggttt--tgggtcctttaat 67
Query: 76 ttgattgagccgtgccaatatca 98
||||||||||||||||||||||
Sbjct: 68 ctgattgagccgtgccaatatca 90
>51691_ptc-miR171h:pmrd
Length = 100
Score = 77.8 bits (39), Expect = 2e-15
Identities = 75/86 (87%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 16 ggggatgttggaatggctcaatcaaatcaaatctcccaagcttt--ttatgggtgtttta 73
||||||||||| |||||||||||| |||||||||||||| || | | ||||| ||||
Sbjct: 8 ggggatgttgggatggctcaatcatatcaaatctcccaaactatgatgttgggtcgttta 67
Query: 74 atttgattgagccgtgccaatatcac 99
|| |||||||||||||||||||||||
Sbjct: 68 atctgattgagccgtgccaatatcac 93
>51690_ptc-miR171g:pmrd
Length = 100
Score = 69.9 bits (35), Expect = 4e-13
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 16 ggggatgttggaatggctcaatcaaatcaaatctcccaagcttt--ttatgggtgtttta 73
||||||||||| |||||||||||| ||||||||||||| | | | ||||| |||||
Sbjct: 8 ggggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtctttta 67
Query: 74 atttgattgagccgtgccaatatcac 99
|| |||||||||||||||||||||||
Sbjct: 68 atctgattgagccgtgccaatatcac 93
>51346_ppe-miR171:pmrd
Length = 97
Score = 65.9 bits (33), Expect = 6e-12
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 19 gatgttggaatggctcaatcaaatcaaatctcccaagctttttat-gggtgttttaattt 77
|||||||| |||||||||||||||||| || ||| || ||||| |||| ||||||||
Sbjct: 9 gatgttggcgtggctcaatcaaatcaaacttctcaa-ctgtttattgggtcctttaattt 67
Query: 78 gattgagccgtgccaatatca 98
|||||||||||||||||||||
Sbjct: 68 gattgagccgtgccaatatca 88
>51345_ppe-miR170:pmrd
Length = 97
Score = 65.9 bits (33), Expect = 6e-12
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 19 gatgttggaatggctcaatcaaatcaaatctcccaagctttttat-gggtgttttaattt 77
|||||||| |||||||||||||||||| || ||| || ||||| |||| ||||||||
Sbjct: 9 gatgttggcgtggctcaatcaaatcaaacttctcaa-ctgtttattgggtcctttaattt 67
Query: 78 gattgagccgtgccaatatca 98
|||||||||||||||||||||
Sbjct: 68 gattgagccgtgccaatatca 88
>54831_vvi-miR171d:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgt 91
>54830_vvi-miR171c:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcacgt 94
>54462_sbi-miR171k:pmrd
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatcacgt 86
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatatcacgt 87
>51685_ptc-miR171b:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatatcacgt 95
>51684_ptc-miR171a:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgt 96
>48897_osa-miR171c:pmrd
Length = 99
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgt 93
>48896_osa-miR171b:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcacgt 94
>46979_ath-miR171c:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 74 atttgattgagccgtgccaatatcacg 100
|||||||||||||||||||||||||||
Sbjct: 84 atttgattgagccgtgccaatatcacg 110
>55029_zma-miR171b:pmrd
Length = 85
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacg 100
||||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatcacg 85
>48403_bra-miR171a:pmrd
Length = 85
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacg 100
||||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatcacg 85
>48386_bol-miR171a:pmrd
Length = 96
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacg 100
||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacg 91
>48367_bna-miR171e:pmrd
Length = 92
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacg 100
||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacg 90
>48366_bna-miR171d:pmrd
Length = 96
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacg 100
||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacg 91
>46877_aqc-miR171b:pmrd
Length = 77
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 70 tttaatttgattgagccgtgccaatatcac 99
|||||| |||||||||||||||||||||||
Sbjct: 48 tttaatctgattgagccgtgccaatatcac 77
>55037_zma-miR171j:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatcacgt 114
>54828_vvi-miR171a:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 70 tttaatttgattgagccgtgccaatatca 98
|||||| ||||||||||||||||||||||
Sbjct: 61 tttaatctgattgagccgtgccaatatca 89
>54453_sbi-miR171b:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatcacgt 101
|||||||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatcacgt 117
>54452_sbi-miR171a:pmrd
Length = 161
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcac 99
|||||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatatcac 144
>48312_bdi-miR171c:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcac 99
|||||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatcac 86
>46881_aqc-miR171f:pmrd
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 74 atttgattgagccgtgccaatatcacgtt 102
|||| ||||||||||||||||||||||||
Sbjct: 59 atttaattgagccgtgccaatatcacgtt 87
>55036_zma-miR171i:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 ttgattgagccgtgccaatatcac 99
||||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatcac 87
>55033_zma-miR171f:pmrd
Length = 155
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 ttgattgagccgtgccaatatcac 99
||||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatcac 137
>54552_sly-miR171b:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 atttgattgagccgtgccaatatcacgt 101
|||| |||||||||||||||||||||||
Sbjct: 59 atttaattgagccgtgccaatatcacgt 86
>51692_ptc-miR171i:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 74 atttgattgagccgtgccaatatc 97
||||||||||||||||||||||||
Sbjct: 97 atttgattgagccgtgccaatatc 120
>55030_zma-miR171c:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
||||| |||||||||||||||||||||
Sbjct: 77 tttgactgagccgtgccaatatcacgt 103
>54553_sly-miR171c:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatcacgt 101
||||||||||||| |||||||||||||
Sbjct: 76 tttgattgagccgcgccaatatcacgt 102
>54551_sly-miR171a:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatc 97
|||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatc 107
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatcac 99
|||||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatcac 117
>48900_osa-miR171f:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatcac 99
|||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatcac 119
>48723_mtr-miR171g:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatc 97
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>48722_mtr-miR171d:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatc 97
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>48406_bra-miR171d:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 gattgagccgtgccaatatcacg 100
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>48405_bra-miR171c:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 gattgagccgtgccaatatcacg 100
|||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcacg 87
>48404_bra-miR171b:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 gattgagccgtgccaatatcacg 100
|||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcacg 94
>48365_bna-miR171c:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 gattgagccgtgccaatatcacg 100
|||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcacg 87
>48364_bna-miR171b:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 gattgagccgtgccaatatcacg 100
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>48363_bna-miR171a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 gattgagccgtgccaatatcacg 100
|||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcacg 94
>46978_ath-miR171b:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 gattgagccgtgccaatatcacg 100
|||||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatcacg 98
>46880_aqc-miR171e:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 75 tttgattgagccgtgccaatatc 97
|||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatatc 1
>46879_aqc-miR171d:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatc 97
|||||||||||||||||||||||
Sbjct: 82 tttgattgagccgtgccaatatc 104
>46876_aqc-miR171a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tttgattgagccgtgccaatatc 97
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>55039_zma-miR171m:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 ttgattgagccgtgccaatatc 97
||||||||||||||||||||||
Sbjct: 92 ttgattgagccgtgccaatatc 113
>55024_zma-miR170m:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 ttgattgagccgtgccaatatc 97
||||||||||||||||||||||
Sbjct: 94 ttgattgagccgtgccaatatc 115
>54579_smo-miR171a:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 gattgagccgtgccaatatcac 99
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
>48567_gma-miR171a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 attgagccgtgccaatatcacg 100
||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacg 91
>55032_zma-miR171e:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>55031_zma-miR171d:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatc 102
>54680_tae-miR170b:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatatc 94
>54460_sbi-miR171i:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>54455_sbi-miR171d:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 60 tgattgagccgtgccaatatc 80
>51689_ptc-miR171f:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatc 121
>51688_ptc-miR171e:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>48905_osa-miR171n:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48899_osa-miR171e:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatc 109
>48898_osa-miR171d:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125
>48894_osa-miR170b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgattgagccgtgccaatatc 97
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
