miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54828_vvi-miR171a:pmrd
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 20 tgatgttggcacggttcaatcggatcaaatctctcagtggctgagtcctttagtctgatt 79
||||||||| |||| |||||| | |||| ||||| ||| ||||||||||| |||||||
Sbjct: 13 tgatgttgggacggctcaatcaaaccaaagatctcaatggttgagtcctttaatctgatt 72
Query: 80 gagccgtgccaatatca 96
|||||||||||||||||
Sbjct: 73 gagccgtgccaatatca 89
>51688_ptc-miR171e:pmrd
Length = 94
Score = 60.0 bits (30), Expect = 4e-10
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 15 aaatttgatgttggcacggttcaatcggatcaaatctctcagtggctgagtcctttagtc 74
|||||||||||||||| | |||||| |||||| | |||| ||| || || |||| ||
Sbjct: 5 aaatttgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatc 64
Query: 75 tgattgagccgtgccaatatcacatt 100
||||||||||||||||||||| ||||
Sbjct: 65 tgattgagccgtgccaatatcgcatt 90
>46877_aqc-miR171b:pmrd
Length = 77
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 64 gtcctttagtctgattgagccgtgccaatatcac 97
|||||||| |||||||||||||||||||||||||
Sbjct: 44 gtcctttaatctgattgagccgtgccaatatcac 77
>54836_vvi-miR171i:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 64 gtcctttagtctgattgagccgtgccaatatca 96
|||||||| ||||||||||||||||||||||||
Sbjct: 58 gtcctttaatctgattgagccgtgccaatatca 90
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 16 aatttgatgttggcacggttcaatcggatcaaatctctcagtggctgagtcctttagtct 75
||||||||||||||| | |||||| |||||| | |||| ||| || || |||| |||
Sbjct: 1 aatttgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatct 60
Query: 76 gattgagccgtgccaatatcacatt 100
|||||||||||||||||||| ||||
Sbjct: 61 gattgagccgtgccaatatcgcatt 85
>51691_ptc-miR171h:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 68 tttagtctgattgagccgtgccaatatcaca 98
|||| ||||||||||||||||||||||||||
Sbjct: 64 tttaatctgattgagccgtgccaatatcaca 94
>51690_ptc-miR171g:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 68 tttagtctgattgagccgtgccaatatcaca 98
|||| ||||||||||||||||||||||||||
Sbjct: 64 tttaatctgattgagccgtgccaatatcaca 94
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 gtctgattgagccgtgccaatatcaca 98
|||||||||||||||||||||||||||
Sbjct: 92 gtctgattgagccgtgccaatatcaca 118
>48900_osa-miR171f:pmrd
Length = 127
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 gtctgattgagccgtgccaatatcaca 98
|||||||||||||||||||||||||||
Sbjct: 94 gtctgattgagccgtgccaatatcaca 120
>55037_zma-miR171j:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatcac 97
|||||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatcac 112
>54453_sbi-miR171b:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatcac 97
|||||||||||||||||||||||||
Sbjct: 91 tctgattgagccgtgccaatatcac 115
>51346_ppe-miR171:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 64 gtcctttagtctgattgagccgtgccaatatca 96
|||||||| | ||||||||||||||||||||||
Sbjct: 56 gtcctttaatttgattgagccgtgccaatatca 88
>51345_ppe-miR170:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 64 gtcctttagtctgattgagccgtgccaatatca 96
|||||||| | ||||||||||||||||||||||
Sbjct: 56 gtcctttaatttgattgagccgtgccaatatca 88
>55036_zma-miR171i:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcaca 98
||||||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatcaca 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 gatgttggcacggttcaatc 40
||||||||||||||||||||
Sbjct: 21 gatgttggcacggttcaatc 40
>55033_zma-miR171f:pmrd
Length = 155
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcaca 98
||||||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatcaca 138
>54452_sbi-miR171a:pmrd
Length = 161
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcaca 98
||||||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatcaca 145
>48904_osa-miR171m:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 gtctgattgagccgtgccaatatc 95
||||||||||||||||||||||||
Sbjct: 84 gtctgattgagccgtgccaatatc 107
>48894_osa-miR170b:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 gtctgattgagccgtgccaatatc 95
||||||||||||||||||||||||
Sbjct: 84 gtctgattgagccgtgccaatatc 107
>55032_zma-miR171e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>55031_zma-miR171d:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 80 tctgattgagccgtgccaatatc 102
>55029_zma-miR171b:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatcac 84
>54831_vvi-miR171d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcac 89
>54830_vvi-miR171c:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcac 92
>54680_tae-miR170b:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 72 tctgattgagccgtgccaatatc 94
>54462_sbi-miR171k:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatcac 84
>54460_sbi-miR171i:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>54455_sbi-miR171d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 113 tctgattgagccgtgccaatatc 135
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatcac 85
>51689_ptc-miR171f:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>51685_ptc-miR171b:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcac 93
>51684_ptc-miR171a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatcac 94
>48905_osa-miR171n:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48899_osa-miR171e:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>48898_osa-miR171d:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>48897_osa-miR171c:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91
>48896_osa-miR171b:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcac 92
>48893_osa-miR170a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatc 95
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>48403_bra-miR171a:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatcac 84
>48386_bol-miR171a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90
>48367_bna-miR171e:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcac 89
>48366_bna-miR171d:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90
>48312_bdi-miR171c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatatcac 86
>46979_ath-miR171c:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatcac 97
|||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatcac 109
>54580_smo-miR171b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ttgagccgtgccaatatcacat 99
||||||||||||||||||||||
Sbjct: 71 ttgagccgtgccaatatcacat 92
>54579_smo-miR171a:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgtgccaatatcac 97
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
>48406_bra-miR171d:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgtgccaatatcac 97
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>48405_bra-miR171c:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgtgccaatatcac 97
||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcac 86
>48404_bra-miR171b:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgtgccaatatcac 97
||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93
>48365_bna-miR171c:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgtgccaatatcac 97
||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcac 86
>48364_bna-miR171b:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgtgccaatatcac 97
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>48363_bna-miR171a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgtgccaatatcac 97
||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93
>46978_ath-miR171b:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgtgccaatatcac 97
||||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatcac 97
>55039_zma-miR171m:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatc 95
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>55024_zma-miR170m:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatc 95
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>54832_vvi-miR171e:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 73 tctgattgagccgtgccaatatcac 97
||||||||||||| |||||||||||
Sbjct: 68 tctgattgagccgcgccaatatcac 92
>54552_sly-miR171b:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 attgagccgtgccaatatcac 97
|||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcac 84
>54551_sly-miR171a:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 tgattgagccgtgccaatatc 95
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
