miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48571_gma-miR172b:pmrd
Length = 153
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 5 cagtcgttgtttgcaaatgtggcatcatcaagattcacatgcaa 48
|||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 5 cagtcgttgtttgcggatgtagcatcatcaagattcacatgcaa 48
>48570_gma-miR172a:pmrd
Length = 159
Score = 56.0 bits (28), Expect = 7e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 5 cagtcgttgtttgcaaatgtggcatcatcaagattcacatgcaa 48
|||||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 5 cagtcgttatttgcggatgtagcatcatcaagattcacatgcaa 48
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 ctgagaatcctgatgatgctgcat 109
||||||||| ||||||||||||||
Sbjct: 117 ctgagaatcttgatgatgctgcat 140
>54837_vvi-miR172a:pmrd
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 11 ttgtttgcaaatgtggcatcatcaagattcacatgcaa 48
|||||||| |||| |||||||||||||||||||||||
Sbjct: 110 ttgtttgcgcatgtagcatcatcaagattcacatgcaa 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 31 tgagaatcttgatgatgctgcatcggcaat 2
>54838_vvi-miR172b:pmrd
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 11 ttgtttgcaaatgtggcatcatcaagattcacatgc 46
||||||||| ||| |||||||||||||||||||||
Sbjct: 118 ttgtttgcaggtgtagcatcatcaagattcacatgc 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 31 tgagaatcttgatgatgctgcatcggcaat 2
>52845_ptc-miRf11023-akr:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacatgcaa 48
|||||||||||||||||||||||
Sbjct: 12 gcatcatcaagattcacatgcaa 34
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaa 115
|||||||| |||||||||||||| |||||
Sbjct: 105 tgagaatcttgatgatgctgcatcggcaa 133
>51903_ptc-miRf10081-akr:pmrd
Length = 147
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacatgcaa 48
|||||||||||||||||||||||
Sbjct: 19 gcatcatcaagattcacatgcaa 41
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 112 tgagaatcttgatgatgctgcatcggcaat 141
>51699_ptc-miR172b:pmrd
Length = 140
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacatgcaa 48
|||||||||||||||||||||||
Sbjct: 16 gcatcatcaagattcacatgcaa 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 109 tgagaatcttgatgatgctgcatcggcaat 138
>51344_ppd-miR172b:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 26 gcatcatcaagattcacatgcaa 48
|||||||||||||||||||||||
Sbjct: 124 gcatcatcaagattcacatgcaa 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 31 tgagaatcttgatgatgctgcatcggcaat 2
>51343_ppd-miR172a:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacatgcaa 48
|||||||||||||||||||||||
Sbjct: 14 gcatcatcaagattcacatgcaa 36
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 107 tgagaatcttgatgatgctgcatcggcaat 136
>48133_ath-miRf11033-akr:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgtggcatcatcaagattcacat 44
|||||||||||||||||||||||
Sbjct: 13 tgtggcatcatcaagattcacat 35
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 85 tgagaatcttgatgatgctgcatcggcaat 114
>47531_ath-miRf10431-akr:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgtggcatcatcaagattcacat 44
|||||||||||||||||||||||
Sbjct: 17 tgtggcatcatcaagattcacat 39
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 89 tgagaatcttgatgatgctgcatcggcaat 118
>46983_ath-miR172a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgtggcatcatcaagattcacat 44
|||||||||||||||||||||||
Sbjct: 4 tgtggcatcatcaagattcacat 26
>55047_zma-miR172n:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgcat 109
||||||||||||||||||||||
Sbjct: 60 gagaatcctgatgatgctgcat 81
>51703_ptc-miR172f:pmrd
Length = 161
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 130 tgagaatcttgatgatgctgcatcggcaat 159
>51549_psi-miR172:pmrd
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgca 108
||||||||||||||||||||||
Sbjct: 46 tgagaatcctgatgatgctgca 67
>51337_pga-miR172:pmrd
Length = 248
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgca 108
||||||||||||||||||||||
Sbjct: 226 tgagaatcctgatgatgctgca 247
>48906_osa-miR172a:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 gtggcatcatcaagattcacat 44
||||||||||||||||||||||
Sbjct: 13 gtggcatcatcaagattcacat 34
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 ctgagaatcctgatgatgctgcat 109
||||||||| ||||||||||||||
Sbjct: 76 ctgagaatcttgatgatgctgcat 99
>55045_zma-miR172f:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 gtggcatcatcaagattcaca 43
|||||||||||||||||||||
Sbjct: 3 gtggcatcatcaagattcaca 23
>55044_zma-miR172e:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 gtggcatcatcaagattcaca 43
|||||||||||||||||||||
Sbjct: 23 gtggcatcatcaagattcaca 43
>55040_zma-miR172a:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 gtggcatcatcaagattcaca 43
|||||||||||||||||||||
Sbjct: 3 gtggcatcatcaagattcaca 23
>54840_vvi-miR172d:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaatgaa 119
|||||||| ||||||||||||||| ||| ||||
Sbjct: 77 tgagaatcttgatgatgctgcattcgcagtgaa 109
>54641_sof-miR172a:pmrd
Length = 300
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 279 gagaatcctgatgatgctgca 299
>54464_sbi-miR172b:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 gtggcatcatcaagattcaca 43
|||||||||||||||||||||
Sbjct: 3 gtggcatcatcaagattcaca 23
>51706_ptc-miR172i:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 96 gagaatcctgatgatgctgca 116
>48913_osa-miR172p:pmrd
Length = 318
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 297 gagaatcctgatgatgctgca 317
>48911_osa-miR172n:pmrd
Length = 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 41 gagaatcctgatgatgctgca 61
>48910_osa-miR172m:pmrd
Length = 297
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 276 gagaatcctgatgatgctgca 296
>48907_osa-miR172b:pmrd
Length = 238
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 gtggcatcatcaagattcaca 43
|||||||||||||||||||||
Sbjct: 13 gtggcatcatcaagattcaca 33
>48693_mes-miR172:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaa 115
|||||||| |||||||||||||| |||||
Sbjct: 114 tgagaatcttgatgatgctgcatcggcaa 142
>48667_hvv-miR172d:pmrd
Length = 272
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 251 gagaatcctgatgatgctgca 271
>48666_hvv-miR172c:pmrd
Length = 137
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 100 gagaatcctgatgatgctgca 120
>48665_hvv-miR172b:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 69 gagaatcctgatgatgctgca 89
>48664_hvv-miR172a:pmrd
Length = 255
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 234 gagaatcctgatgatgctgca 254
>48314_bdi-miR172d:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gagaatcctgatgatgctgca 108
|||||||||||||||||||||
Sbjct: 71 gagaatcctgatgatgctgca 91
>55046_zma-miR172m:pmrd
Length = 455
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 agaatcctgatgatgctgca 108
||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgca 20
>54755_tca-miR172:pmrd
Length = 240
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 agaatcctgatgatgctgca 108
||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgca 20
>54684_tae-miR172b:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 agaatcctgatgatgctgca 108
||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgca 20
>54683_tae-miR172a:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 agaatcctgatgatgctgca 108
||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgca 20
>48912_osa-miR172o:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 agaatcctgatgatgctgca 108
||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgca 20
>46989_ath-miR172m:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 agaatcctgatgatgctgca 108
||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgca 20
