miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48499_ghr-miR390b:pmrd
Length = 132
Score = 83.8 bits (42), Expect = 3e-17
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 76 tgatcctcat-tagcgctatccatcctgagtttcatcggttcttcttgct 124
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tgatcctcatatagcgctatccatcctgagtttcatcggttcttcttgct 130
>48498_ghr-miR390a:pmrd
Length = 124
Score = 77.8 bits (39), Expect = 2e-15
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 76 tgatcctcat-tagcgctatccatcctgagtttcatcggttcttctt 121
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 78 tgatcctcatatagcgctatccatcctgagtttcatcggttcttctt 124
>48500_ghr-miR390c:pmrd
Length = 114
Score = 65.9 bits (33), Expect = 7e-12
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 76 tgatcctcat-tagcgctatccatcctgagtttcatcggtt 115
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 74 tgatcctcatatagcgctatccatcctgagtttcatcggtt 114
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccattgatgatc 51
|||||||||||||||||||||||||||| |||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatggatgatc 41
>54848_vvi-miR390:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttc 119
|||||||| ||||||||||||| ||||||||
Sbjct: 109 gcgctatctatcctgagtttcacgggttcttc 140
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
||||||||||||||||||||||||||||
Sbjct: 9 ctgttaagctcaggagggatagcgccat 36
>51718_ptc-miR390c:pmrd
Length = 123
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>51716_ptc-miR390a:pmrd
Length = 119
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>51719_ptc-miR390d:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgcc 41
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagttt 107
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>51717_ptc-miR390b:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgcc 41
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcat 110
|||||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttcat 101
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttctt 121
||||||||||||||||||||||| || |||||||
Sbjct: 69 gcgctatccatcctgagtttcattggctcttctt 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
>46995_ath-miR390a:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttctt 121
||||||||||||||||||||||| || |||||||
Sbjct: 69 gcgctatccatcctgagtttcattggctcttctt 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
>48372_bna-miR390c:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttcttgct 124
||||||||||||||||||| ||| | |||||||||||
Sbjct: 85 gcgctatccatcctgagttccatggcttcttcttgct 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccat 45
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 gttaagctcaggagggatagcgcc 41
||||||||||||||||||||||||
Sbjct: 1 gttaagctcaggagggatagcgcc 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagttt 107
||||||||||||||||||||
Sbjct: 72 gcgctatccatcctgagttt 91
>51391_ppt-miR390a:pmrd
Length = 137
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgccatt 44
||||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccatt 39
>48371_bna-miR390b:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttctt 121
||||| ||||||||||||||||| || |||||||
Sbjct: 67 gcgctgtccatcctgagtttcattggctcttctt 100
>48370_bna-miR390a:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccat 55
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttcttgct 124
||||||||||||||||||| || | |||||||||||
Sbjct: 95 gcgctatccatcctgagttctatggcttcttcttgct 131
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgccat 43
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagttt 107
||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagttt 90
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgccat 43
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagttt 107
||||||||||||||||||||
Sbjct: 52 gcgctatccatcctgagttt 71
>46996_ath-miR390b:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgccat 43
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttctt 121
||||||||||||||||||| ||| | ||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttctt 120
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 agctcaggagggatagcgcc 41
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 agctcaggagggatagcgcc 41
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
