miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 72 aattttggatcatgctatccctttggattcctcctttggt 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 aattttggatcatgctatccctttggattcctcctttggt 95
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 actagaggaggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||||||||||
Sbjct: 4 actagaggaggcatccaaagggatcgcattgatcc 38
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 72 aattttggatcatgctatccctttggattcctcctttggt 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 aattttggatcatgctatccctttggattcctcctttggt 92
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 actagaggaggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||||||||||
Sbjct: 1 actagaggaggcatccaaagggatcgcattgatcc 35
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 72 aattttggatcatgctatccctttggattcctcctttggt 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 aattttggatcatgctatccctttggattcctcctttggt 93
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 actagaggaggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||||||||||
Sbjct: 1 actagaggaggcatccaaagggatcgcattgatcc 35
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 72 aattttggatcatgctatccctttggattcctcctttggt 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 aattttggatcatgctatccctttggattcctcctttggt 93
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 actagaggaggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||||||||||
Sbjct: 1 actagaggaggcatccaaagggatcgcattgatcc 35
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 72 aattttggatcatgctatccctttggattcctcctttggt 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 aattttggatcatgctatccctttggattcctcctttggt 92
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 actagaggaggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||||||||||
Sbjct: 1 actagaggaggcatccaaagggatcgcattgatcc 35
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 72 aattttggatcatgctatccctttggattcctcctttggt 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 aattttggatcatgctatccctttggattcctcctttggt 4
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 8 actagaggaggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||||||||||
Sbjct: 95 actagaggaggcatccaaagggatcgcattgatcc 61
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 72 aattttggatcatgctatccctttggattcctcctttggt 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 aattttggatcatgctatccctttggattcctcctttggt 96
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 actagaggaggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||||||||||
Sbjct: 4 actagaggaggcatccaaagggatcgcattgatcc 38
>54850_vvi-miR393b:pmrd
Length = 83
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 75 tttggatcatgctatccctttggattcctcctttgg 110
||||||||||||||||||||||||||||||||||||
Sbjct: 48 tttggatcatgctatccctttggattcctcctttgg 83
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 12 gaggaggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||||||
Sbjct: 2 gaggaggcatccaaagggatcgcattgatcc 32
>51721_ptc-miR393b:pmrd
Length = 84
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 72 aattttggatcatgctatccctttggattcctcct 106
|||||||||||||||||||||||||||||||||||
Sbjct: 50 aattttggatcatgctatccctttggattcctcct 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 agaggaggcatccaaagggatcgcattgatcc 42
||||||||||||||||||||||||||||||||
Sbjct: 1 agaggaggcatccaaagggatcgcattgatcc 32
>51720_ptc-miR393a:pmrd
Length = 85
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 72 aattttggatcatgctatccctttggattcctcct 106
|||||||||||||||||||||||||||||||||||
Sbjct: 51 aattttggatcatgctatccctttggattcctcct 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 agaggaggcatccaaagggatcgcattgatcc 42
||||||||||||||||||||||||||||||||
Sbjct: 1 agaggaggcatccaaagggatcgcattgatcc 32
>48730_mtr-miR393:pmrd
Length = 135
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 12 gaggaggcatccaaagggatcgcattgatcct 43
||||||||||||||||||||||||||||||||
Sbjct: 12 gaggaggcatccaaagggatcgcattgatcct 43
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 ggatcatgctatccctttggattcctccttt 108
||||||||| ||||||||||||| |||||||
Sbjct: 96 ggatcatgccatccctttggatttctccttt 126
>48576_gma-miR393:pmrd
Length = 120
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 12 gaggaggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||||||
Sbjct: 2 gaggaggcatccaaagggatcgcattgatcc 32
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 73 attttggatcatgctatccctttggattcctccttt 108
|||| ||||||||||||||||||||||| |||||||
Sbjct: 85 atttgggatcatgctatccctttggatttctccttt 120
>54470_sbi-miR393:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 gaggaggcatccaaagggatcgcattgatcc 42
||||| |||||||||||||||||||||||||
Sbjct: 12 gaggaagcatccaaagggatcgcattgatcc 42
>48917_osa-miR393:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 gcatccaaagggatcgcattgatcctt 44
|||||||||||||||||||||||||||
Sbjct: 8 gcatccaaagggatcgcattgatcctt 34
>48731_mtr-miR393b:pmrd
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 aggcatccaaagggatcgcattgatcc 42
|||||||||||||||||||||||||||
Sbjct: 1 aggcatccaaagggatcgcattgatcc 27
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 attttggatcatgctatccctttggattc 101
|||| ||||||||||||||||||||||||
Sbjct: 89 atttgggatcatgctatccctttggattc 117
>47214_ath-miRf10114-akr:pmrd
Length = 131
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 74 ttttggatcatgctatccctttggattcctcctt 107
||||||||||||||||| |||||||||| |||||
Sbjct: 98 ttttggatcatgctatctctttggattcatcctt 131
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcct 43
||||||||||||||||||||||||
Sbjct: 9 atccaaagggatcgcattgatcct 32
>46998_ath-miR393a:pmrd
Length = 133
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 74 ttttggatcatgctatccctttggattcctcctt 107
||||||||||||||||| |||||||||| |||||
Sbjct: 99 ttttggatcatgctatctctttggattcatcctt 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 agaggaggcatccaaagggatcgcattgatcct 43
|||||| | ||||||||||||||||||||||||
Sbjct: 1 agaggaaggatccaaagggatcgcattgatcct 33
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcct 43
||||||||||||||||||||||||
Sbjct: 11 atccaaagggatcgcattgatcct 34
>46999_ath-miR393b:pmrd
Length = 160
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcct 43
||||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcct 33
>48373_bna-miR393:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatcct 43
|||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcct 23
>55062_zma-miR393f:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatcc 42
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55057_zma-miR393a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatcc 42
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>54849_vvi-miR393a:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatcc 42
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>48919_osa-miR393b:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 actagaggaggcatccaaagggatcgcattgatc 41
||||| ||||| |||||||||||||||||||||
Sbjct: 14 actagtggaggactccaaagggatcgcattgatc 47
>48918_osa-miR393b:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 actagaggaggcatccaaagggatcgcattgatc 41
||||| ||||| |||||||||||||||||||||
Sbjct: 14 actagtggaggactccaaagggatcgcattgatc 47
>55063_zma-miR393g:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>55061_zma-miR393e:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatc 67
>55060_zma-miR393d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatc 69
>55059_zma-miR393c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55058_zma-miR393b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55056_zma-miR393:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>51723_ptc-miR393d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>51722_ptc-miR393c:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48501_ghr-miR393:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
