miRNEST 2.0, an integrative microRNA resource :: BLAST
>48578_gma-miR396a:pmrd
Length = 140
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 2 catggccctctttgtattcttccacagctttcttgaactgc 42
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2 catggctctctttgtattcttccacagctttcttgaactgc 42
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtgggaagatacggacagggtcaa 149
|||| ||||||||||||||||||||||||| || ||||||||
Sbjct: 98 ttgcggttcaataaagctgtgggaagatacagatagggtcaa 139
>48680_lja-miR396:pmrd
Length = 108
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 cctctttgtattcttccacagctttcttgaactgc 42
|||||||||||||||||||||||||||||||||||
Sbjct: 3 cctctttgtattcttccacagctttcttgaactgc 37
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtgggaagata 136
|||| ||||||||||||||||||||||||
Sbjct: 71 ttgcggttcaataaagctgtgggaagata 99
>54871_vvi-miR396d:pmrd
Length = 120
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 ctttgtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgc 32
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 107 gttgcagttcaataaagctgtgggaagatac 137
||||| |||||||||||||||||||||||||
Sbjct: 84 gttgcggttcaataaagctgtgggaagatac 114
>51735_ptc-miR396b:pmrd
Length = 132
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 ctttgtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgc 32
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 113 gttcaataaagctgtgggaagatac 137
|||||||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaagatac 130
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 7 ccctctttgtattcttccacagctttcttgaactgc 42
|||||| |||||||||||||||||||||||||||||
Sbjct: 4 ccctctctgtattcttccacagctttcttgaactgc 39
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtgggaagatacggacagggtca 148
|||| ||||||||||||||||||||||||| ||||| ||||
Sbjct: 125 ttgcggttcaataaagctgtgggaagatacagacagagtca 165
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 ttgtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgc 30
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 113 gttcaataaagctgtgggaagatac 137
|||||||||||||||||||||||||
Sbjct: 104 gttcaataaagctgtgggaagatac 128
>51734_ptc-miR396a:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 105 ttgttgcagttcaataaagctgtgggaagatac 137
||||||| |||||||||||||||||||||||||
Sbjct: 89 ttgttgcggttcaataaagctgtgggaagatac 121
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 gtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgc 32
>47008_ath-miR396a:pmrd
Length = 151
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 14 tgtattcttccacagctttcttgaactgc 42
|||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgc 32
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtgggaagatac 137
|||| |||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagatac 147
>55073_zma-miR396b:pmrd
Length = 136
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 3 atggccctctttgtattcttccacagctttcttgaactgc 42
|||||| ||||||| ||||||||||||||||||||||||
Sbjct: 3 atggccttctttgtgatcttccacagctttcttgaactgc 42
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgcagttcaataaagctgtgggaa 132
||||||||||||||||||||||||
Sbjct: 95 tgcagttcaataaagctgtgggaa 118
>54645_sof-miR396:pmrd
Length = 134
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 3 atggccctctttgtattcttccacagctttcttgaactgc 42
|||||| ||||||| ||||||||||||||||||||||||
Sbjct: 3 atggccttctttgtgatcttccacagctttcttgaactgc 42
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgcagttcaataaagctgtgggaa 132
||||||||||||||||||||||||
Sbjct: 93 tgcagttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 3 atggccctctttgtattcttccacagctttcttgaactgc 42
|||||| ||||||| ||||||||||||||||||||||||
Sbjct: 3 atggccttctttgtgatcttccacagctttcttgaactgc 42
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgcagttcaataaagctgtgggaa 132
||||||||||||||||||||||||
Sbjct: 87 tgcagttcaataaagctgtgggaa 110
>48508_ghr-miR396c:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 catacgggtatgttgttgcagttcaataaagctgtggga 131
|||||| ||| |||||||| |||||||||||||||||||
Sbjct: 77 catacgagtacgttgttgcggttcaataaagctgtggga 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55072_zma-miR396a:pmrd
Length = 137
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1 acatggccctctttgtattcttccacagctttcttgaactgc 42
||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1 acatggccctccttgccgtcttccacagctttcttgaactgc 42
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 gcagttcaataaagctgtgggaa 132
|||||||||||||||||||||||
Sbjct: 97 gcagttcaataaagctgtgggaa 119
>54485_sbi-miR396a:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1 acatggccctctttgtattcttccacagctttcttgaactgc 42
||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1 acatggccctccttgccgtcttccacagctttcttgaactgc 42
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 gcagttcaataaagctgtgggaa 132
|||||||||||||||||||||||
Sbjct: 85 gcagttcaataaagctgtgggaa 107
>48507_ghr-miR396b:pmrd
Length = 115
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 94 atacgggtatgttgttgcagttcaataaagctgtggga 131
||||| ||| |||||||| |||||||||||||||||||
Sbjct: 78 atacgagtacgttgttgcggttcaataaagctgtggga 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55079_zma-miR396h:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgc 42
||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgc 25
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 gcagttcaataaagctgtgggaa 132
|||||||||||||||||||||||
Sbjct: 92 gcagttcaataaagctgtgggaa 114
>55074_zma-miR396c:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgc 42
||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgc 25
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 gcagttcaataaagctgtgggaa 132
|||||||||||||||||||||||
Sbjct: 80 gcagttcaataaagctgtgggaa 102
>48946_osa-miR396b:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgc 42
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgcagttcaataaagctgtgggaa 132
||||||||||||||||||||||||
Sbjct: 84 tgcagttcaataaagctgtgggaa 107
>48945_osa-miR396a:pmrd
Length = 154
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgc 42
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 gcagttcaataaagctgtgggaa 132
|||||||||||||||||||||||
Sbjct: 123 gcagttcaataaagctgtgggaa 145
>55083_zma-miR396l:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 tgcagttcaataaagctgtggga 131
|||||||||||||||||||||||
Sbjct: 75 tgcagttcaataaagctgtggga 97
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55082_zma-miR396k:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 tgcagttcaataaagctgtggga 131
|||||||||||||||||||||||
Sbjct: 76 tgcagttcaataaagctgtggga 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactg 41
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>55081_zma-miR396j:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 gcagttcaataaagctgtggga 131
||||||||||||||||||||||
Sbjct: 77 gcagttcaataaagctgtggga 98
>55080_zma-miR396i:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55078_zma-miR396g:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgctacttctt 50
|||||||||||||||||||| || ||||||
Sbjct: 3 ttccacagctttcttgaacttcttcttctt 32
>55077_zma-miR396f:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgctacttctt 50
|||||||||||||||||||| || ||||||
Sbjct: 3 ttccacagctttcttgaacttcttcttctt 32
>48485_gcl-miR396a:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgc 80
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 108 ttgcagttcaataaagctgtggga 131
|||| |||||||||||||||||||
Sbjct: 24 ttgcggttcaataaagctgtggga 1
>46887_aqc-miR396a:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgc 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtgggaa 132
|||| ||||||||||||||||||||
Sbjct: 97 ttgcggttcaataaagctgtgggaa 121
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48486_gcl-miR396b:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtggga 131
|||| |||||||||||||||||||
Sbjct: 78 ttgcggttcaataaagctgtggga 101
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
